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C5h1orf185 similar to human chromosome 1 open reading frame 185 [ Rattus norvegicus (Norway rat) ]

Gene ID: 689589, updated on 2-Nov-2024

Summary

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Official Symbol
C5h1orf185provided by RGD
Official Full Name
similar to human chromosome 1 open reading frame 185provided by RGD
Primary source
RGD:1591038
See related
EnsemblRapid:ENSRNOG00000009138 AllianceGenome:RGD:1591038
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human C1orf185 (chromosome 1 open reading frame 185). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward (RPKM 287.0) See more
Orthologs
human mouse all
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Genomic context

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See C5h1orf185 in Genome Data Viewer
Location:
5q35
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (129504609..129524506, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (124276074..124295881, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (129154544..129175596, complement)

Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 39A Neighboring gene ring finger protein 11 Neighboring gene RNA, U4 small nuclear 2 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene enolase 1, pseudogene 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein C1orf185 homolog
Names
rCG50434-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001271399.2 → NP_001258328.1  uncharacterized protein C1orf185 homolog

    See identical proteins and their annotated locations for NP_001258328.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000005
    UniProtKB/TrEMBL
    A6JYZ2
    Conserved Domains (1) summary
    pfam15842
    Location:7 → 188
    DUF4718; Domain of unknown function (DUF4718)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086023.1 Reference GRCr8

    Range
    129504609..129524506 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039110795.2 → XP_038966723.1  uncharacterized protein C1orf185 homolog isoform X3

    Conserved Domains (1) summary
    pfam15842
    Location:7 → 218
    DUF4718; Domain of unknown function (DUF4718)

  2. XM_063288442.1 → XP_063144512.1  uncharacterized protein C1orf185 homolog isoform X5

    UniProtKB/TrEMBL
    A6JYZ3, F1LT57
    Related
    ENSRNOP00000012112.7, ENSRNOT00000012112.9

  3. XM_039110796.2 → XP_038966724.1  uncharacterized protein C1orf185 homolog isoform X4

    Related
    ENSRNOP00000103616.1, ENSRNOT00000142061.1
    Conserved Domains (1) summary
    pfam15842
    Location:3 → 214
    DUF4718; Domain of unknown function (DUF4718)

  4. XM_039110793.2 → XP_038966721.1  uncharacterized protein C1orf185 homolog isoform X1

    Conserved Domains (1) summary
    pfam15842
    Location:56 → 267
    DUF4718; Domain of unknown function (DUF4718)

  5. XM_039110794.2 → XP_038966722.1  uncharacterized protein C1orf185 homolog isoform X2

    Conserved Domains (1) summary
    pfam15842
    Location:56 → 237
    DUF4718; Domain of unknown function (DUF4718)

  6. XM_039110797.2 → XP_038966725.1  uncharacterized protein C1orf185 homolog isoform X6

    Conserved Domains (1) summary
    pfam15842
    Location:56 → 148
    DUF4718; Domain of unknown function (DUF4718)
Nucleotide Protein Strain
Heading Accession and Version

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