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Clec2d2l2 C-type lectin domain family 2 member D2 like 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 689770, updated on 2-Nov-2024

Summary

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Official Symbol
Clec2d2l2provided by RGD
Official Full Name
C-type lectin domain family 2 member D2 like 2provided by RGD
Primary source
RGD:1588718
See related
EnsemblRapid:ENSRNOG00000069744 AllianceGenome:RGD:1588718
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Clr4; Clec2d4
Summary
Predicted to enable carbohydrate binding activity. Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Clec2d2l2 in Genome Data Viewer
Location:
4q42
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (163836496..163852526, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (162150431..162166457, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100912974 Neighboring gene C-type lectin domain family 2 member D2 Neighboring gene C-type lectin domain family 2 member D2 like 1 Neighboring gene C-type lectin domain family 2, member D Neighboring gene protein phosphatase 2, regulatory subunit B', alpha like 1 Neighboring gene uncharacterized LOC102549299 Neighboring gene C-type lectin domain family 2 member D-like 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two major groups of rat NKR-P1 receptors can be distinguished based on chromosomal localization, phylogenetic analysis and Clr ligand binding. Kveberg L, et al. Eur J Immunol, 2009 Feb. PMID 19130483
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
C-type lectin domain family 2 member d4
Names
C-type lectin-related protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001142304.1 → NP_001135776.1  C-type lectin domain family 2 member d4

    See identical proteins and their annotated locations for NP_001135776.1

    Status: VALIDATED

    Source sequence(s)
    CK843446, FJ404474
    UniProtKB/TrEMBL
    B7TXW6, B8PS69
    Conserved Domains (1) summary
    cd03593
    Location:130 → 243
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    163836496..163852526 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039108384.2 → XP_038964312.1  C-type lectin domain family 2 member d4 isoform X1

    UniProtKB/TrEMBL
    B8PS69, F7FPR5
    Related
    ENSRNOP00000040749.6, ENSRNOT00000042872.8
    Conserved Domains (1) summary
    PHA02642
    Location:106 → 276
    PHA02642; C-type lectin-like protein; Provisional
Nucleotide Protein Strain
Heading Accession and Version

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