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C8h11orf52 similar to human chromosome 11 open reading frame 52 [ Rattus norvegicus (Norway rat) ]

Gene ID: 689959, updated on 10-Jul-2024

Summary

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Official Symbol
C8h11orf52provided by RGD
Official Full Name
similar to human chromosome 11 open reading frame 52provided by RGD
Primary source
RGD:1586341
See related
EnsemblRapid:ENSRNOG00000051792 AllianceGenome:RGD:1586341
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human C11orf52 (chromosome 11 open reading frame 52). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 89.5), Liver (RPKM 88.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See C8h11orf52 in Genome Data Viewer
Location:
8q23
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (59977717..59984706, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (51081342..51088333, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (55164736..55174613, complement)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene dihydrolipoamide S-acetyltransferase Neighboring gene DIX domain containing 1 Neighboring gene uncharacterized LOC120094337 Neighboring gene high mobility group nucleosomal binding domain 2, pseudogene 2 Neighboring gene heat shock protein family B (small) member 2 Neighboring gene crystallin, alpha B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Large-scale proteomics and phosphoproteomics of urinary exosomes. Gonzales PA, et al. J Am Soc Nephrol, 2009 Feb. PMID 19056867, Free PMC Article
  2. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. Principe S, et al. Proteomics, 2013 May. PMID 23533145, Free PMC Article
  3. Proteomic analysis of podocyte exosome-enriched fraction from normal human urine. Prunotto M, et al. J Proteomics, 2013 Apr 26. PMID 23376485

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
uncharacterized protein C11orf52 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109559.1 → NP_001103029.1  uncharacterized protein C11orf52 homolog

    See identical proteins and their annotated locations for NP_001103029.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473975
    UniProtKB/TrEMBL
    A0A8I6AFQ5, A6J4F2
    Conserved Domains (1) summary
    pfam15147
    Location:1 → 126
    DUF4578; Domain of unknown function (DUF4578)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    59977717..59984706 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039082164.2 → XP_038938092.1  uncharacterized protein C11orf52 homolog isoform X2

    Conserved Domains (1) summary
    pfam15147
    Location:37 → 118
    DUF4578; Domain of unknown function (DUF4578)

  2. XM_063266160.1 → XP_063122230.1  uncharacterized protein C11orf52 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8I6AFQ5
    Related
    ENSRNOP00000091820.2, ENSRNOT00000101377.2
Nucleotide Protein Strain
Heading Accession and Version

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