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Pwwp4 PWWP domain containing 4 [ Rattus norvegicus (Norway rat) ]

Gene ID: 690082, updated on 17-Aug-2024

Summary

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Official Symbol
Pwwp4provided by RGD
Official Full Name
PWWP domain containing 4provided by RGD
Primary source
RGD:1585131
See related
EnsemblRapid:ENSRNOG00000068777 AllianceGenome:RGD:1585131
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Testes (RPKM 14.5), Adrenal (RPKM 2.8) and 3 other tissues See more
Orthologs
human all
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Genomic context

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See Pwwp4 in Genome Data Viewer
Location:
Xq37
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (156159344..156165457)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (151008141..151014223)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (146966354..146974136, complement)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene X-linked lymphocyte-regulated 3A Neighboring gene X-linked lymphocyte-regulated 5C Neighboring gene dnaJ homolog subfamily C member 8-like Neighboring gene zinc finger protein 275 Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
PWWP domain-containing DNA repair factor 4
Names
PWWP domain-containing DNA repair factor 3B-like
PWWP domain-containing protein MUM1-like
PWWP domain-containing protein MUM1L1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001408900.1 → NP_001395829.1  PWWP domain-containing DNA repair factor 4

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000021
    UniProtKB/TrEMBL
    A0A8I5ZV76
    Related
    ENSRNOP00000083316.1, ENSRNOT00000109322.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    156159344..156165457
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017590172.3 → XP_017445661.2  PWWP domain-containing DNA repair factor 4 isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZV76
    Conserved Domains (2) summary
    cd06080
    Location:407 → 486
    MUM1_like; Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase ...
    PHA03377
    Location:113 → 242
    PHA03377; EBNA-3C; Provisional
Nucleotide Protein Strain
Heading Accession and Version

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