Bcl7a BAF chromatin remodeling complex subunit BCL7A [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Bcl7aprovided by RGD
Official Full Name: BAF chromatin remodeling complex subunit BCL7Aprovided by RGD
Primary source: RGD:1585128
See related: EnsemblRapid:ENSRNOG00000056017 AllianceGenome:RGD:1585128
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to be part of SWI/SNF complex. Orthologous to human BCL7A (BAF chromatin remodeling complex subunit BCL7A). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Biased expression in Kidney (RPKM 72.5), Brain (RPKM 66.8) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 12q16

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	12	NC_086030.1 (38872851..38904770, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	12	NC_051347.1 (33211978..33243903, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	12	NC_005111.4 (38659294..38691191, complement)

Chromosome 12 - NC_086030.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

BE106487 (e-PCR)
- UniSTS:246280

RH139180 (e-PCR)
- UniSTS:221266

Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
part_of SWI/SNF complex	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: B-cell CLL/lymphoma 7 protein family member A

Names: B-cell CLL/lymphoma 7A; BCL tumor suppressor 7A; BCL7A, BAF complex component

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001398956.2 → NP_001385885.1 B-cell CLL/lymphoma 7 protein family member A

Status: VALIDATED

Source sequence(s)

JAXUCZ010000012

Related

ENSRNOP00000112484.1, ENSRNOT00000162155.1

Conserved Domains (1) summary

pfam04714
Location:4 → 50

BCL_N; BCL7, N-terminal conserver region