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Ly49si4-ps1 immunoreceptor Ly49si4, pseudogene 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 690097, updated on 28-Oct-2024

Summary

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Official Symbol
Ly49si4-ps1provided by RGD
Official Full Name
immunoreceptor Ly49si4, pseudogene 1provided by RGD
Primary source
RGD:1585116
See related
EnsemblRapid:ENSRNOG00000053661 AllianceGenome:RGD:1585116
Gene type
pseudo
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Expression
Biased expression in Spleen (RPKM 193.6), Lung (RPKM 51.2) and 8 other tissues See more
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Genomic context

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See Ly49si4-ps1 in Genome Data Viewer
Location:
4q42
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (165409744..165470136, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (163724510..163782315, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (164026176..164053682, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene immunoreceptor Ly49si1 Neighboring gene immunoreceptor Ly49si3 like 1 Neighboring gene immunoreceptor Ly49si2 Neighboring gene immunoreceptor Ly49si1 like 1 Neighboring gene killer cell lectin-like receptor, subfamily A, member 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Other Names

  • T-cell surface glycoprotein YE1/48-like
  • immunoreceptor Ly49si3-like
  • killer cell lectin-like receptor 6-like
  • killer cell lectin-like receptor 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    165409744..165470136 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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