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Rbbp8nl RBBP8 N-terminal like [ Rattus norvegicus (Norway rat) ]

Gene ID: 690416, updated on 28-Oct-2024

Summary

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Official Symbol
Rbbp8nlprovided by RGD
Official Full Name
RBBP8 N-terminal likeprovided by RGD
Primary source
RGD:1596090
See related
EnsemblRapid:ENSRNOG00000057245 AllianceGenome:RGD:1596090
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human RBBP8NL (RBBP8 N-terminal like). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Biased expression in Kidney (RPKM 11.6), Lung (RPKM 11.1) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Rbbp8nl in Genome Data Viewer
Location:
3q43
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (187741642..187756598, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (167364048..167378993, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (175646786..175661377, complement)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene Cdk5 and Abl enzyme substrate 2 Neighboring gene ribosomal protein S21 Neighboring gene uncharacterized LOC134486214 Neighboring gene GATA binding protein 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Comparison of tear protein levels in breast cancer patients and healthy controls using a de novo proteomic approach. Böhm D, et al. Oncol Rep, 2012 Aug. PMID 22664934, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
RBBP8 N-terminal-like protein; similar to Protein C20orf151

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001431782.1 → NP_001418711.1  similar to Protein C20orf151

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    A0A0G2JTF0

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    187741642..187756598 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039106759.2 → XP_038962687.1  RBBP8 N-terminal-like protein

    UniProtKB/TrEMBL
    A0A0G2JTF0, A6KMA6
    Conserved Domains (2) summary
    PRK10263
    Location:297 → 599
    PRK10263; DNA translocase FtsK; Provisional
    pfam10482
    Location:4 → 122
    CtIP_N; tumor-suppressor protein CtIP N-terminal domain

  2. XM_039106758.2 → XP_038962686.1  RBBP8 N-terminal-like protein

    Related
    ENSRNOP00000068684.2, ENSRNOT00000080191.3
    Conserved Domains (2) summary
    PRK10263
    Location:297 → 599
    PRK10263; DNA translocase FtsK; Provisional
    pfam10482
    Location:4 → 122
    CtIP_N; tumor-suppressor protein CtIP N-terminal domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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