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Zfp418l1 zinc finger protein 418 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 691135, updated on 2-Nov-2024

Summary

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Official Symbol
Zfp418l1provided by RGD
Official Full Name
zinc finger protein 418 like 1provided by RGD
Primary source
RGD:1587451
See related
AllianceGenome:RGD:1587451
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Adrenal (RPKM 66.2), Brain (RPKM 56.8) and 9 other tissues See more
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Genomic context

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See Zfp418l1 in Genome Data Viewer
Location:
1q12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (75671211..75684615)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (66638112..66649875)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (69672957..69684113)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 418 Neighboring gene vomeronasal 2 receptor, pseudogene 46 Neighboring gene vomeronasal 1 receptor pseudogene 42 Neighboring gene zinc finger protein 772

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 418-like
Names
zinc finger protein 271-like
zinc finger protein 883-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    75671211..75684615
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008759083.4 → XP_008757305.3  zinc finger protein 418-like isoform X1

    UniProtKB/TrEMBL
    A0A8I6A7D0
    Conserved Domains (4) summary
    COG5048
    Location:341 → 743
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:597 → 617
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:47 → 87
    KRAB; KRAB box
    pfam13465
    Location:302 → 324
    zf-H2C2_2; Zinc-finger double domain

  2. XM_039100461.2 → XP_038956389.1  zinc finger protein 418-like isoform X4

    Conserved Domains (4) summary
    COG5048
    Location:341 → 673
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:597 → 617
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:47 → 87
    KRAB; KRAB box
    pfam13465
    Location:302 → 324
    zf-H2C2_2; Zinc-finger double domain

  3. XM_039100458.2 → XP_038956386.1  zinc finger protein 418-like isoform X3

    Conserved Domains (4) summary
    COG5048
    Location:327 → 729
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:583 → 603
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:44 → 73
    KRAB; KRAB box
    pfam13465
    Location:288 → 310
    zf-H2C2_2; Zinc-finger double domain

  4. XM_039100457.2 → XP_038956385.1  zinc finger protein 418-like isoform X2

    UniProtKB/TrEMBL
    A0A8I5ZKX0
    Conserved Domains (4) summary
    COG5048
    Location:328 → 730
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:584 → 604
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:34 → 74
    KRAB; KRAB box
    pfam13465
    Location:289 → 311
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
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