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Ubap1l ubiquitin associated protein 1-like [ Rattus norvegicus (Norway rat) ]

Gene ID: 691572, updated on 17-Aug-2024

Summary

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Symbol
Ubap1lprovided by RGD
Full Name
ubiquitin associated protein 1-likeprovided by RGD
Primary source
RGD:1582742
See related
EnsemblRapid:ENSRNOG00000050979 AllianceGenome:RGD:1582742
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable ubiquitin binding activity. Predicted to be involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to be part of ESCRT I complex. Orthologous to human UBAP1L (ubiquitin associated protein 1 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Lung (RPKM 12.2), Brain (RPKM 11.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ubap1l in Genome Data Viewer
Location:
8q24
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (74772794..74792753)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (65877488..65897593)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (70876516..70895723)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene caseinolytic mitochondrial matrix peptidase chaperone subunit X Neighboring gene programmed cell death 7 Neighboring gene kelch repeat and BTB domain containing 13 Neighboring gene RAS-like, family 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables ubiquitin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of ESCRT I complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ubiquitin associated protein 1-like; ubiquitin-associated protein 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    74772794..74792753
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006243297.4 → XP_006243359.1  ubiquitin-associated protein 1-like

    See identical proteins and their annotated locations for XP_006243359.1

    UniProtKB/TrEMBL
    A6J5E9, M0R9J7
    Conserved Domains (3) summary
    PHA03269
    Location:194 → 345
    PHA03269; envelope glycoprotein C; Provisional
    PRK12323
    Location:161 → 260
    PRK12323; DNA polymerase III subunit gamma/tau
    cd14316
    Location:340 → 376
    UBA2_UBAP1_like; UBA2 domain found in ubiquitin-associated protein 1 (UBAP-1) and similar proteins

  2. XM_039082471.2 → XP_038938399.1  ubiquitin-associated protein 1-like

    UniProtKB/TrEMBL
    A6J5E9, M0R9J7
    Related
    ENSRNOP00000066167.3, ENSRNOT00000072939.4
    Conserved Domains (3) summary
    PHA03269
    Location:194 → 345
    PHA03269; envelope glycoprotein C; Provisional
    PRK12323
    Location:161 → 260
    PRK12323; DNA polymerase III subunit gamma/tau
    cd14316
    Location:340 → 376
    UBA2_UBAP1_like; UBA2 domain found in ubiquitin-associated protein 1 (UBAP-1) and similar proteins

  3. XM_039082472.2 → XP_038938400.1  ubiquitin-associated protein 1-like

    UniProtKB/TrEMBL
    A6J5E9, M0R9J7
    Conserved Domains (3) summary
    PHA03269
    Location:194 → 345
    PHA03269; envelope glycoprotein C; Provisional
    PRK12323
    Location:161 → 260
    PRK12323; DNA polymerase III subunit gamma/tau
    cd14316
    Location:340 → 376
    UBA2_UBAP1_like; UBA2 domain found in ubiquitin-associated protein 1 (UBAP-1) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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