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Cnppd1 cyclin Pas1/PHO80 domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 69171, updated on 2-Nov-2024

Summary

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Official Symbol
Cnppd1provided by MGI
Official Full Name
cyclin Pas1/PHO80 domain containing 1provided by MGI
Primary source
MGI:MGI:1916421
See related
Ensembl:ENSMUSG00000033159 AllianceGenome:MGI:1916421
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1810031K17Rik
Summary
Predicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to be located in membrane. Predicted to be part of cyclin-dependent protein kinase holoenzyme complex. Predicted to be active in nucleus. Is expressed in several structures, including brain; cardiovascular system; genitourinary system; gut; and immune system. Orthologous to human CNPPD1 (cyclin Pas1/PHO80 domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in thymus adult (RPKM 27.7), colon adult (RPKM 22.0) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Cnppd1 in Genome Data Viewer
Location:
1 C4; 1 38.6 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (75112406..75119374, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (75135762..75142744, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene non-homologous end joining factor 1 Neighboring gene STARR-seq mESC enhancer starr_01350 Neighboring gene STARR-seq mESC enhancer starr_01351 Neighboring gene STARR-seq mESC enhancer starr_01352 Neighboring gene solute carrier family 23 (nucleobase transporters), member 3 Neighboring gene reticulophagy regulator family member 2 Neighboring gene STARR-positive B cell enhancer ABC_E1550 Neighboring gene zinc finger, AN1 type domain 2B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Composition and dosage of a multipartite enhancer cluster control developmental expression of Ihh (Indian hedgehog). Will AJ, et al. Nat Genet, 2017 Oct. PMID 28846100, Free PMC Article
  2. The tissue-specific transcriptomic landscape of the mid-gestational mouse embryo. Werber M, et al. Development, 2014 Jun. PMID 24803591
  3. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  4. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  5. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables cyclin-dependent protein serine/threonine kinase regulator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein kinase binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of cyclin-dependent protein kinase holoenzyme complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
protein CNPPD1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001356264.1 → NP_001343193.1  protein CNPPD1

    Status: VALIDATED

    Source sequence(s)
    AC173548, AK159252, BE987844, CA562223
    Consensus CDS
    CCDS15063.1
    UniProtKB/Swiss-Prot
    Q3TE87, Q8K158
    UniProtKB/TrEMBL
    Q3TXI3
    Related
    ENSMUSP00000140289.2, ENSMUST00000190679.7
    Conserved Domains (1) summary
    cl00050
    Location:81 → 174
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

  2. NM_026977.3 → NP_081253.1  protein CNPPD1

    See identical proteins and their annotated locations for NP_081253.1

    Status: VALIDATED

    Source sequence(s)
    AC173548, AK145962, BE987844
    Consensus CDS
    CCDS15063.1
    UniProtKB/Swiss-Prot
    Q3TE87, Q8K158
    UniProtKB/TrEMBL
    Q3TXI3
    Related
    ENSMUSP00000044799.6, ENSMUST00000041213.12
    Conserved Domains (1) summary
    cl00050
    Location:81 → 174
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    75112406..75119374 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006496542.4 → XP_006496605.1  protein CNPPD1 isoform X1

    See identical proteins and their annotated locations for XP_006496605.1

    UniProtKB/Swiss-Prot
    Q3TE87, Q8K158
    UniProtKB/TrEMBL
    Q3TXI3
    Conserved Domains (1) summary
    cl00050
    Location:81 → 174
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

  2. XM_006496541.4 → XP_006496604.1  protein CNPPD1 isoform X1

    See identical proteins and their annotated locations for XP_006496604.1

    UniProtKB/Swiss-Prot
    Q3TE87, Q8K158
    UniProtKB/TrEMBL
    Q3TXI3
    Conserved Domains (1) summary
    cl00050
    Location:81 → 174
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8K158.1 GenPept UniProtKB/Swiss-Prot:Q8K158

Gene LinkOut

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