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Ms4a19 membrane-spanning 4-domains, subfamily A, member 19 [ Mus musculus (house mouse) ]

Gene ID: 69416, updated on 2-Nov-2024

Summary

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Official Symbol
Ms4a19provided by MGI
Official Full Name
membrane-spanning 4-domains, subfamily A, member 19provided by MGI
Primary source
MGI:MGI:1916666
See related
Ensembl:ENSMUSG00000024728 AllianceGenome:MGI:1916666
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700025F22Rik
Summary
Predicted to be involved in cell surface receptor signaling pathway. Predicted to be active in plasma membrane. Orthologous to human MS4A19P (membrane spanning 4-domains A19, pseudogene). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 16.9) See more
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Genomic context

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See Ms4a19 in Genome Data Viewer
Location:
19 A; 19 7.82 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (11117026..11142987, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (11139662..11165623, complement)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_45564 Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2 pseudogene Neighboring gene membrane-spanning 4-domains, subfamily A, member 20 Neighboring gene NS1-associated protein 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_45565 Neighboring gene membrane-spanning 4-domains, subfamily A, member 13 Neighboring gene RIKEN cDNA 4930526L06 gene Neighboring gene STARR-seq mESC enhancer starr_45566 Neighboring gene STARR-seq mESC enhancer starr_45567 Neighboring gene membrane-spanning 4-domains, subfamily A, member 12

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in cell surface receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC69416

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001370777.1 → NP_001357706.1  uncharacterized protein LOC69416 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC148321
    Conserved Domains (1) summary
    pfam04103
    Location:16 → 121
    CD20; CD20-like family

  2. NM_027074.4 → NP_081350.1  uncharacterized protein LOC69416 isoform 2

    See identical proteins and their annotated locations for NP_081350.1

    Status: VALIDATED

    Source sequence(s)
    AC148321
    Consensus CDS
    CCDS50394.1
    UniProtKB/TrEMBL
    Q9D9Y7
    Related
    ENSMUSP00000077828.5, ENSMUST00000078770.5

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    11117026..11142987 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011247336.2 → XP_011245638.1  uncharacterized protein LOC69416 isoform X1

    See identical proteins and their annotated locations for XP_011245638.1

    Conserved Domains (1) summary
    pfam04103
    Location:16 → 121
    CD20; CD20-like family

  2. XM_030251071.1 → XP_030106931.1  uncharacterized protein LOC69416 isoform X1

    Conserved Domains (1) summary
    pfam04103
    Location:16 → 121
    CD20; CD20-like family

  3. XM_030251072.1 → XP_030106932.1  uncharacterized protein LOC69416 isoform X1

    Conserved Domains (1) summary
    pfam04103
    Location:16 → 121
    CD20; CD20-like family
Nucleotide Protein Strain
Heading Accession and Version

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