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Antxr1 anthrax toxin receptor 1 [ Mus musculus (house mouse) ]

Gene ID: 69538, updated on 2-Nov-2024

Summary

Official Symbol
Antxr1provided by MGI
Official Full Name
anthrax toxin receptor 1provided by MGI
Primary source
MGI:MGI:1916788
See related
Ensembl:ENSMUSG00000033420 AllianceGenome:MGI:1916788
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Tem8; Antrx1; 2310008J16Rik; 2810405N18Rik
Summary
Predicted to enable actin filament binding activity; collagen binding activity; and transmembrane signaling receptor activity. Acts upstream of or within blood vessel development; negative regulation of extracellular matrix assembly; and positive regulation of metallopeptidase activity. Predicted to be located in external side of plasma membrane; filopodium membrane; and lamellipodium membrane. Predicted to be active in cell surface and plasma membrane. Is expressed in several structures, including brain; chondrocranium; costal cartilage; immune system; and liver. Human ortholog(s) of this gene implicated in GAPO syndrome and colorectal carcinoma. Orthologous to human ANTXR1 (ANTXR cell adhesion molecule 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in limb E14.5 (RPKM 23.9), bladder adult (RPKM 13.0) and 20 other tissues See more
Orthologs
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Genomic context

See Antxr1 in Genome Data Viewer
Location:
6 D1; 6 37.94 cM
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (87110835..87312757, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (87133853..87335809, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene DNA segment, Chr 6, ERATO Doi 527, expressed Neighboring gene STARR-positive B cell enhancer mm9_chr6:87069488-87069789 Neighboring gene predicted gene, 53292 Neighboring gene STARR-positive B cell enhancer ABC_E4842 Neighboring gene STARR-seq mESC enhancer starr_16552 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:87178031-87178232 Neighboring gene predicted gene, 38851 Neighboring gene STARR-seq mESC enhancer starr_16554 Neighboring gene predicted gene, 34170 Neighboring gene predicted gene, 34090 Neighboring gene gastrokine 1 Neighboring gene gastrokine 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables actin filament binding ISO
Inferred from Sequence Orthology
more info
 
enables actin filament binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables collagen binding ISO
Inferred from Sequence Orthology
more info
 
enables collagen binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables transmembrane signaling receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables transmembrane signaling receptor activity ISO
Inferred from Sequence Orthology
more info
 
enables transmembrane signaling receptor activity ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
is_active_in cell surface IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in cell surface ISO
Inferred from Sequence Orthology
more info
PubMed 
located_in external side of plasma membrane ISO
Inferred from Sequence Orthology
more info
PubMed 
located_in filopodium membrane ISO
Inferred from Sequence Orthology
more info
 
located_in filopodium membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in lamellipodium membrane ISO
Inferred from Sequence Orthology
more info
 
located_in lamellipodium membrane ISS
Inferred from Sequence or Structural Similarity
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
PubMed 

General protein information

Preferred Names
anthrax toxin receptor 1
Names
tumor endothelial marker 8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_054041.2NP_473382.1  anthrax toxin receptor 1 precursor

    See identical proteins and their annotated locations for NP_473382.1

    Status: VALIDATED

    Source sequence(s)
    BB649806, BC094544
    Consensus CDS
    CCDS20318.1
    UniProtKB/Swiss-Prot
    Q505H2, Q9CZ52
    UniProtKB/TrEMBL
    A0A0N4SV16
    Related
    ENSMUSP00000045634.10, ENSMUST00000042025.12
    Conserved Domains (3) summary
    cd01474
    Location:37221
    vWA_ATR; ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ...
    pfam05586
    Location:394486
    Ant_C; Anthrax receptor C-terminus region
    pfam05587
    Location:223317
    Anth_Ig; Anthrax receptor extracellular domain

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    87110835..87312757 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)