U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Fam89a family with sequence similarity 89, member A [ Mus musculus (house mouse) ]

Gene ID: 69627, updated on 4-Nov-2024

Summary

Official Symbol
Fam89aprovided by MGI
Official Full Name
family with sequence similarity 89, member Aprovided by MGI
Primary source
MGI:MGI:1916877
See related
Ensembl:ENSMUSG00000043068 AllianceGenome:MGI:1916877
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2310031A18Rik
Summary
Is expressed in cranial ganglion and otocyst. Orthologous to human FAM89A (family with sequence similarity 89 member A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in placenta adult (RPKM 18.3), liver adult (RPKM 12.0) and 25 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Fam89a in Genome Data Viewer
Location:
8 E2; 8 72.81 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (125466996..125478605, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (124740257..124751866, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 13 Neighboring gene predicted gene, 46058 Neighboring gene predicted gene, 30273 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:127246145-127246328 Neighboring gene ARV1 homolog, fatty acid homeostasis modulator Neighboring gene general transcription factor IIB pseudogene Neighboring gene predicted gene, 46059

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081120.2NP_001074589.1  protein FAM89A

    See identical proteins and their annotated locations for NP_001074589.1

    Status: VALIDATED

    Source sequence(s)
    AC151736
    Consensus CDS
    CCDS40516.1
    UniProtKB/Swiss-Prot
    Q14BJ1, Q8R3X3
    Related
    ENSMUSP00000058156.6, ENSMUST00000055257.7

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    125466996..125478605 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)