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1700028J19Rik RIKEN cDNA 1700028J19 gene [ Mus musculus (house mouse) ]

Gene ID: 70004, updated on 2-Nov-2024

Summary

Official Symbol
1700028J19Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700028J19 geneprovided by MGI
Primary source
MGI:MGI:1917254
See related
Ensembl:ENSMUSG00000038782 AllianceGenome:MGI:1917254
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 575.6) See more
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Genomic context

See 1700028J19Rik in Genome Data Viewer
Location:
7 B3; 7 28.74 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (43879353..43885546, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (44229929..44236122, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene 10109 Neighboring gene STARR-seq mESC enhancer starr_18789 Neighboring gene kallikrein 1 Neighboring gene predicted gene, 36864 Neighboring gene RIKEN cDNA 2410002F23 gene Neighboring gene STARR-positive B cell enhancer ABC_E1085 Neighboring gene predicted gene, 26247 Neighboring gene small nucleolar RNA, C/D box 88C

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_029436.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    AK006462, BC061239, BC100477
    Related
    ENSMUST00000206686.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    43879353..43885546 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)