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PCF11 PCF11 cleavage and polyadenylation factor subunit [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 704490, updated on 17-Aug-2024

Summary

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Official Symbol
PCF11provided by VGNC
Official Full Name
PCF11 cleavage and polyadenylation factor subunitprovided by VGNC
Primary source
VGNC:VGNC:75701
See related
Ensembl:ENSMMUG00000005029
Gene type
protein coding
RefSeq status
MODEL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See PCF11 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
16
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 14 NC_041767.1 (76305720..76334860)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 14 NC_027906.1 (75523463..75552557)

Chromosome 14 - NC_041767.1Genomic Context describing neighboring genes Neighboring gene RAB30, member RAS oncogene family Neighboring gene uncharacterized LOC114672366 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene uncharacterized LOC106993409 Neighboring gene uncharacterized LOC106993411 Neighboring gene cyclin-dependent kinases regulatory subunit 1 pseudogene Neighboring gene ankyrin repeat domain 42

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase II complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in termination of RNA polymerase II transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of mRNA cleavage factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA cleavage complex 2 protein Pcf11
Names
pre-mRNA cleavage complex 2 protein Pcf11-like
pre-mRNA cleavage complex II protein Pcf11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041767.1 Reference Mmul_10 Primary Assembly

    Range
    76305720..76334860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015115346.2 → XP_014970832.1  pre-mRNA cleavage complex 2 protein Pcf11 isoform X1

    UniProtKB/TrEMBL
    A0A5F7ZM27
    Related
    ENSMMUP00000066682.1, ENSMMUT00000103123.1
    Conserved Domains (2) summary
    pfam01391
    Location:1153 → 1222
    Collagen; Collagen triple helix repeat (20 copies)
    cd03562
    Location:19 → 130
    CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...

  2. XM_015115344.2 → XP_014970830.1  pre-mRNA cleavage complex 2 protein Pcf11 isoform X2

    UniProtKB/TrEMBL
    A0A5F7ZM27
    Conserved Domains (2) summary
    pfam01391
    Location:1153 → 1222
    Collagen; Collagen triple helix repeat (20 copies)
    cd03562
    Location:19 → 130
    CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...

  3. XM_015115347.2 → XP_014970833.1  pre-mRNA cleavage complex 2 protein Pcf11 isoform X3

    UniProtKB/TrEMBL
    F7ASL5, G7NEG2, H9FVM7
    Related
    ENSMMUP00000006658.4, ENSMMUT00000007086.4
    Conserved Domains (1) summary
    cd03562
    Location:19 → 130
    CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...

  4. XM_028833877.1 → XP_028689710.1  pre-mRNA cleavage complex 2 protein Pcf11 isoform X4

    UniProtKB/TrEMBL
    G7NEG2
    Conserved Domains (4) summary
    TIGR00618
    Location:195 → 445
    sbcc; exonuclease SbcC
    PTZ00108
    Location:374 → 616
    PTZ00108; DNA topoisomerase 2-like protein; Provisional
    pfam09606
    Location:858 → 1266
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cd16982
    Location:19 → 145
    CID_Pcf11; CID (CTD-Interacting Domain) of Pcf11
Nucleotide Protein
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