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RNF144B ring finger protein 144B [ Macaca mulatta (Rhesus monkey) ]

Gene ID: 705099, updated on 17-Aug-2024

Summary

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Official Symbol
RNF144Bprovided by VGNC
Official Full Name
ring finger protein 144Bprovided by VGNC
Primary source
VGNC:VGNC:104424
Locus tag
EGK_14508
See related
Ensembl:ENSMMUG00000062089
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Macaca mulatta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
Orthologs
human mouse all
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Genomic context

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See RNF144B in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (151502705..151691401, complement)
102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (18681547..18869668)

Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene microRNA mir-548a Neighboring gene small nucleolar RNA U13 Neighboring gene ATP-dependent RNA helicase DDX18 pseudogene Neighboring gene inosine-5'-monophosphate dehydrogenase 1 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene DEK proto-oncogene Neighboring gene lysine demethylase 1B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
  2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrial membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF144B
NP_001252628.1
XP_014991122.1
XP_028702582.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001265699.2 → NP_001252628.1  E3 ubiquitin-protein ligase RNF144B

    See identical proteins and their annotated locations for NP_001252628.1

    Status: PROVISIONAL

    Source sequence(s)
    JV636079
    UniProtKB/TrEMBL
    A0A8J8Y4D1, F7H3H2, G7MQT6, I0FQK5
    Related
    ENSMMUP00000066517.1, ENSMMUT00000101455.1
    Conserved Domains (3) summary
    smart00647
    Location:101 → 166
    IBR; In Between Ring fingers
    cd16778
    Location:28 → 84
    mRING-HC-C4C4_RBR_RNF144B; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144B (RNF144B)
    pfam01485
    Location:190 → 225
    IBR; IBR domain, a half RING-finger domain

RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Mmul_10 Primary Assembly

Genomic

  1. NC_041757.1 Reference Mmul_10 Primary Assembly

    Range
    151502705..151691401 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015135636.2 → XP_014991122.1  E3 ubiquitin-protein ligase RNF144B isoform X1

    UniProtKB/TrEMBL
    A0A8J8Y4D1, F7H3H2, G7MQT6, I0FQK5
    Conserved Domains (3) summary
    smart00647
    Location:101 → 166
    IBR; In Between Ring fingers
    cd16778
    Location:28 → 84
    mRING-HC-C4C4_RBR_RNF144B; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144B (RNF144B)
    pfam01485
    Location:190 → 225
    IBR; IBR domain, a half RING-finger domain

  2. XM_028846749.1 → XP_028702582.1  E3 ubiquitin-protein ligase RNF144B isoform X1

    UniProtKB/TrEMBL
    A0A8J8Y4D1, F7H3H2, G7MQT6, I0FQK5
    Conserved Domains (3) summary
    smart00647
    Location:101 → 166
    IBR; In Between Ring fingers
    cd16778
    Location:28 → 84
    mRING-HC-C4C4_RBR_RNF144B; Modified RING finger, HC subclass (C4C4-type), found in RING finger protein 144B (RNF144B)
    pfam01485
    Location:190 → 225
    IBR; IBR domain, a half RING-finger domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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