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4921517D22Rik RIKEN cDNA 4921517D22 gene [ Mus musculus (house mouse) ]

Gene ID: 70900, updated on 2-Nov-2024

Summary

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Official Symbol
4921517D22Rikprovided by MGI
Official Full Name
RIKEN cDNA 4921517D22 geneprovided by MGI
Primary source
MGI:MGI:1918150
See related
Ensembl:ENSMUSG00000049902 AllianceGenome:MGI:1918150
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Orthologous to human C9orf153 (chromosome 9 open reading frame 153). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 5.3) See more
Orthologs
human all
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Genomic context

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See 4921517D22Rik in Genome Data Viewer
Location:
13 B2; 13 31.87 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (59835216..59841917, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (59687402..59694103, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_34713 Neighboring gene N(alpha)-acetyltransferase 35, NatC auxiliary subunit Neighboring gene STARR-seq mESC enhancer starr_34715 Neighboring gene golgi membrane protein 1 Neighboring gene STARR-seq mESC enhancer starr_34717 Neighboring gene STARR-seq mESC enhancer starr_34719 Neighboring gene spermatogenesis associated 31 subfamily D, member 1A Neighboring gene predicted gene, 40972

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C9orf153 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_183290.2 → NP_899113.1  uncharacterized protein C9orf153 homolog

    See identical proteins and their annotated locations for NP_899113.1

    Status: PROVISIONAL

    Source sequence(s)
    AC134869, AK133255
    Consensus CDS
    CCDS36688.1
    UniProtKB/TrEMBL
    Q8CET0
    Related
    ENSMUSP00000061773.6, ENSMUST00000061597.7

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    59835216..59841917 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006517375.2 → XP_006517438.1  uncharacterized protein C9orf153 homolog isoform X1

    Conserved Domains (1) summary
    pfam17673
    Location:2 → 94
    DUF5532; Family of unknown function (DUF5532)
Nucleotide Protein Strain
Heading Accession and Version

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