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4921504E06Rik RIKEN cDNA 4921504E06 gene [ Mus musculus (house mouse) ]

Gene ID: 70909, updated on 2-Nov-2024

Summary

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Official Symbol
4921504E06Rikprovided by MGI
Official Full Name
RIKEN cDNA 4921504E06 geneprovided by MGI
Primary source
MGI:MGI:1918087
See related
Ensembl:ENSMUSG00000026734 AllianceGenome:MGI:1918087
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4921522E24Rik
Summary
Orthologous to human C10orf67 (chromosome 10 open reading frame 67). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 3.7) See more
Orthologs
human all
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Genomic context

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See 4921504E06Rik in Genome Data Viewer
Location:
2 A3; 2 13.4 cM
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (19467648..19558721, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (19462837..19553910, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1810010K12 gene Neighboring gene pancreas specific transcription factor 1a, opposite strand Neighboring gene pancreas specific transcription factor, 1a Neighboring gene STARR-seq mESC enhancer starr_03826 Neighboring gene STARR-positive B cell enhancer mm9_chr2:19427465-19427766 Neighboring gene STARR-positive B cell enhancer mm9_chr2:19450447-19450747 Neighboring gene STARR-seq mESC enhancer starr_03827 Neighboring gene predicted gene, 39764 Neighboring gene STARR-seq mESC enhancer starr_03829 Neighboring gene STARR-seq mESC enhancer starr_03830 Neighboring gene STARR-positive B cell enhancer ABC_E5895 Neighboring gene STARR-positive B cell enhancer ABC_E5896 Neighboring gene predicted gene 13348

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Ptf1a, a bHLH transcriptional gene, defines GABAergic neuronal fates in cerebellum. Hoshino M, et al. Neuron, 2005 Jul 21. PMID 16039563
  2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C10orf67 homolog, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027600.4 → NP_081876.2  uncharacterized protein C10orf67 homolog, mitochondrial

    See identical proteins and their annotated locations for NP_081876.2

    Status: PROVISIONAL

    Source sequence(s)
    AL928806, AL928877, BX649213
    Consensus CDS
    CCDS15716.1
    UniProtKB/TrEMBL
    Q8CET2
    Related
    ENSMUSP00000058720.5, ENSMUST00000062060.5
    Conserved Domains (4) summary
    COG1196
    Location:116 → 311
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    pfam15821
    Location:37 → 145
    DUF4709; Domain of unknown function (DUF4709)
    pfam15852
    Location:477 → 547
    DUF4724; Domain of unknown function (DUF4724)
    pfam17253
    Location:420 → 447
    DUF5320; Family of unknown function (DUF5320)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    19467648..19558721 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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