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Lrrfip2 leucine rich repeat (in FLII) interacting protein 2 [ Mus musculus (house mouse) ]

Gene ID: 71268, updated on 2-Nov-2024

Summary

Official Symbol
Lrrfip2provided by MGI
Official Full Name
leucine rich repeat (in FLII) interacting protein 2provided by MGI
Primary source
MGI:MGI:1918518
See related
Ensembl:ENSMUSG00000032497 AllianceGenome:MGI:1918518
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5133400F20Rik
Summary
Predicted to enable LRR domain binding activity. Acts upstream of or within regulation of gene expression and toll-like receptor signaling pathway. Is expressed in 1st branchial arch mandibular component mesenchyme; craniocervical region bone; and facial prominence. Orthologous to human LRRFIP2 (LRR binding FLII interacting protein 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in testis adult (RPKM 12.8), placenta adult (RPKM 9.9) and 28 other tissues See more
Orthologs
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Genomic context

See Lrrfip2 in Genome Data Viewer
Location:
9 F3; 9 60.92 cM
Exon count:
33
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (110946614..111054736)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (111117546..111225668)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_25286 Neighboring gene ribosomal protein L31, pseudogene 19 Neighboring gene predicted gene, 26409 Neighboring gene predicted gene, 53519 Neighboring gene STARR-seq mESC enhancer starr_25288 Neighboring gene predicted gene, 57536 Neighboring gene predicted gene, 51692 Neighboring gene mutL homolog 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:111177746-111177899 Neighboring gene EPM2A interacting protein 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
leucine-rich repeat flightless-interacting protein 2
Names
LRR FLII-interacting protein 2

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164838.1NP_001158310.1  leucine-rich repeat flightless-interacting protein 2 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform 1.
    Source sequence(s)
    AC132832, AK078881, BY346593
    Consensus CDS
    CCDS52941.1
    UniProtKB/Swiss-Prot
    Q8BVD1, Q91WK0, Q9CU89
    UniProtKB/TrEMBL
    E9QN52
    Related
    ENSMUSP00000035078.7, ENSMUST00000035078.13
    Conserved Domains (2) summary
    pfam04111
    Location:311405
    APG6; Autophagy protein Apg6
    pfam09738
    Location:47340
    LRRFIP; LRRFIP family
  2. NM_001374664.1NP_001361593.1  leucine-rich repeat flightless-interacting protein 2 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC132832
    Consensus CDS
    CCDS90673.1
    UniProtKB/Swiss-Prot
    Q8BVD1, Q91WK0, Q9CU89
    UniProtKB/TrEMBL
    A0A0G2JEP4
    Related
    ENSMUSP00000142851.2, ENSMUST00000196981.5
    Conserved Domains (2) summary
    pfam09738
    Location:47349
    LRRFIP; LRRFIP family
    pfam11932
    Location:365424
    DUF3450; Protein of unknown function (DUF3450)
  3. NM_027742.3NP_082018.1  leucine-rich repeat flightless-interacting protein 2 isoform 2

    See identical proteins and their annotated locations for NP_082018.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon in the 5' coding region compared to variant 1 but maintains the reading frame. The resulting protein (isoform 2) is shorter than isoform 1.
    Source sequence(s)
    AC132832, AK078881, BY346593
    Consensus CDS
    CCDS23583.1
    UniProtKB/Swiss-Prot
    Q8BVD1, Q91WK0, Q9CU89
    UniProtKB/TrEMBL
    A0A0R4J169
    Related
    ENSMUSP00000095944.3, ENSMUST00000098340.7
    Conserved Domains (2) summary
    pfam04111
    Location:296390
    APG6; Autophagy protein Apg6
    pfam09738
    Location:47325
    LRRFIP; LRRFIP family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    110946614..111054736
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011243000.3XP_011241302.1  leucine-rich repeat flightless-interacting protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A668KLE1
    Conserved Domains (3) summary
    TIGR04211
    Location:465549
    SH3_and_anchor; SH3 domain protein
    pfam09738
    Location:319673
    LRRFIP; LRRFIP family
    pfam11932
    Location:689748
    DUF3450; Protein of unknown function (DUF3450)
  2. XM_036155284.1XP_036011177.1  leucine-rich repeat flightless-interacting protein 2 isoform X7

    UniProtKB/TrEMBL
    A0A668KLE1
    Conserved Domains (2) summary
    pfam09738
    Location:319642
    LRRFIP; LRRFIP family
    pfam11932
    Location:658717
    DUF3450; Protein of unknown function (DUF3450)
  3. XM_017313589.3XP_017169078.1  leucine-rich repeat flightless-interacting protein 2 isoform X15

    UniProtKB/TrEMBL
    A0A668KLE1
    Conserved Domains (2) summary
    pfam09738
    Location:319608
    LRRFIP; LRRFIP family
    pfam11932
    Location:624683
    DUF3450; Protein of unknown function (DUF3450)
  4. XM_011243004.3XP_011241306.1  leucine-rich repeat flightless-interacting protein 2 isoform X5

    UniProtKB/TrEMBL
    A0A668KLE1
    Conserved Domains (3) summary
    TIGR04211
    Location:441525
    SH3_and_anchor; SH3 domain protein
    pfam09738
    Location:319649
    LRRFIP; LRRFIP family
    pfam11932
    Location:665724
    DUF3450; Protein of unknown function (DUF3450)
  5. XM_017313590.3XP_017169079.1  leucine-rich repeat flightless-interacting protein 2 isoform X17

    UniProtKB/TrEMBL
    A0A668KLE1
    Conserved Domains (2) summary
    pfam09738
    Location:319584
    LRRFIP; LRRFIP family
    pfam11932
    Location:600659
    DUF3450; Protein of unknown function (DUF3450)
  6. XM_036155286.1XP_036011179.1  leucine-rich repeat flightless-interacting protein 2 isoform X14

    UniProtKB/TrEMBL
    A0A668KLE1
    Conserved Domains (2) summary
    pfam09738
    Location:286609
    LRRFIP; LRRFIP family
    pfam11932
    Location:625684
    DUF3450; Protein of unknown function (DUF3450)
  7. XM_030244586.1XP_030100446.1  leucine-rich repeat flightless-interacting protein 2 isoform X16

    UniProtKB/TrEMBL
    A0A668KLE1
    Conserved Domains (2) summary
    pfam09738
    Location:301600
    LRRFIP; LRRFIP family
    pfam11932
    Location:616675
    DUF3450; Protein of unknown function (DUF3450)
  8. XM_036155287.1XP_036011180.1  leucine-rich repeat flightless-interacting protein 2 isoform X22

    Conserved Domains (2) summary
    pfam09738
    Location:196485
    LRRFIP; LRRFIP family
    pfam11932
    Location:501560
    DUF3450; Protein of unknown function (DUF3450)
  9. XM_030244588.2XP_030100448.1  leucine-rich repeat flightless-interacting protein 2 isoform X24

    UniProtKB/TrEMBL
    A0A0G2JFV5
    Conserved Domains (2) summary
    pfam09738
    Location:196461
    LRRFIP; LRRFIP family
    pfam11932
    Location:477536
    DUF3450; Protein of unknown function (DUF3450)
  10. XM_030244589.1XP_030100449.1  leucine-rich repeat flightless-interacting protein 2 isoform X26

    Conserved Domains (2) summary
    pfam09738
    Location:47435
    LRRFIP; LRRFIP family
    pfam11932
    Location:451510
    DUF3450; Protein of unknown function (DUF3450)
  11. XM_030244591.1XP_030100451.1  leucine-rich repeat flightless-interacting protein 2 isoform X31

    Conserved Domains (2) summary
    pfam09738
    Location:47411
    LRRFIP; LRRFIP family
    pfam11932
    Location:427486
    DUF3450; Protein of unknown function (DUF3450)
  12. XM_011243024.3XP_011241326.1  leucine-rich repeat flightless-interacting protein 2 isoform X32

    Conserved Domains (3) summary
    TIGR04211
    Location:197281
    SH3_and_anchor; SH3 domain protein
    pfam05266
    Location:380454
    DUF724; Protein of unknown function (DUF724)
    pfam09738
    Location:47405
    LRRFIP; LRRFIP family
  13. XM_011243026.3XP_011241328.1  leucine-rich repeat flightless-interacting protein 2 isoform X43

    UniProtKB/TrEMBL
    A0A1L1SSC0
    Conserved Domains (2) summary
    pfam09738
    Location:267532
    LRRFIP; LRRFIP family
    pfam11932
    Location:548607
    DUF3450; Protein of unknown function (DUF3450)
  14. XM_030244587.2XP_030100447.1  leucine-rich repeat flightless-interacting protein 2 isoform X20

    UniProtKB/TrEMBL
    A0A1L1SSC0
    Conserved Domains (2) summary
    pfam09738
    Location:200489
    LRRFIP; LRRFIP family
    pfam11932
    Location:505564
    DUF3450; Protein of unknown function (DUF3450)
  15. XM_036155288.1XP_036011181.1  leucine-rich repeat flightless-interacting protein 2 isoform X35

    Conserved Domains (2) summary
    pfam09738
    Location:47380
    LRRFIP; LRRFIP family
    pfam11932
    Location:396455
    DUF3450; Protein of unknown function (DUF3450)
  16. XM_017313591.3XP_017169080.1  leucine-rich repeat flightless-interacting protein 2 isoform X34

    Conserved Domains (2) summary
    pfam05266
    Location:358432
    DUF724; Protein of unknown function (DUF724)
    pfam09738
    Location:47383
    LRRFIP; LRRFIP family
  17. XM_030244593.1XP_030100453.1  leucine-rich repeat flightless-interacting protein 2 isoform X33

    Conserved Domains (3) summary
    TIGR04211
    Location:182266
    SH3_and_anchor; SH3 domain protein
    pfam05266
    Location:365439
    DUF724; Protein of unknown function (DUF724)
    pfam09738
    Location:47390
    LRRFIP; LRRFIP family
  18. XM_036155289.1XP_036011182.1  leucine-rich repeat flightless-interacting protein 2 isoform X39

    Conserved Domains (2) summary
    pfam09738
    Location:47356
    LRRFIP; LRRFIP family
    pfam11932
    Location:372431
    DUF3450; Protein of unknown function (DUF3450)
  19. XM_030244596.1XP_030100456.1  leucine-rich repeat flightless-interacting protein 2 isoform X38

    Conserved Domains (2) summary
    pfam09738
    Location:47359
    LRRFIP; LRRFIP family
    pfam11932
    Location:375434
    DUF3450; Protein of unknown function (DUF3450)
  20. XM_011243001.4XP_011241303.1  leucine-rich repeat flightless-interacting protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A668KLE1
    Related
    ENSMUSP00000159250.2, ENSMUST00000239186.2
    Conserved Domains (3) summary
    TIGR04211
    Location:462546
    SH3_and_anchor; SH3 domain protein
    pfam09738
    Location:316670
    LRRFIP; LRRFIP family
    pfam11932
    Location:686745
    DUF3450; Protein of unknown function (DUF3450)
  21. XM_036155285.1XP_036011178.1  leucine-rich repeat flightless-interacting protein 2 isoform X9

    UniProtKB/TrEMBL
    A0A668KLE1
    Conserved Domains (2) summary
    pfam09738
    Location:286640
    LRRFIP; LRRFIP family
    pfam11932
    Location:656715
    DUF3450; Protein of unknown function (DUF3450)
  22. XM_011243005.4XP_011241307.1  leucine-rich repeat flightless-interacting protein 2 isoform X6

    UniProtKB/TrEMBL
    A0A668KLE1
    Conserved Domains (3) summary
    TIGR04211
    Location:439523
    SH3_and_anchor; SH3 domain protein
    pfam09738
    Location:293647
    LRRFIP; LRRFIP family
    pfam11932
    Location:663722
    DUF3450; Protein of unknown function (DUF3450)
  23. XM_011243012.4XP_011241314.1  leucine-rich repeat flightless-interacting protein 2 isoform X13

    UniProtKB/TrEMBL
    A0A668KLE1
    Conserved Domains (3) summary
    TIGR04211
    Location:409493
    SH3_and_anchor; SH3 domain protein
    pfam09738
    Location:263617
    LRRFIP; LRRFIP family
    pfam11932
    Location:633692
    DUF3450; Protein of unknown function (DUF3450)
  24. XM_011243003.4XP_011241305.1  leucine-rich repeat flightless-interacting protein 2 isoform X4

    UniProtKB/TrEMBL
    A0A668KLE1
    Conserved Domains (3) summary
    TIGR04211
    Location:446530
    SH3_and_anchor; SH3 domain protein
    pfam09738
    Location:300654
    LRRFIP; LRRFIP family
    pfam11932
    Location:670729
    DUF3450; Protein of unknown function (DUF3450)
  25. XM_011243002.4XP_011241304.1  leucine-rich repeat flightless-interacting protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A668KLE1
    Conserved Domains (3) summary
    TIGR04211
    Location:450534
    SH3_and_anchor; SH3 domain protein
    pfam09738
    Location:304658
    LRRFIP; LRRFIP family
    pfam11932
    Location:674733
    DUF3450; Protein of unknown function (DUF3450)
  26. XM_011243008.4XP_011241310.1  leucine-rich repeat flightless-interacting protein 2 isoform X10

    UniProtKB/TrEMBL
    A0A668KLE1
    Conserved Domains (3) summary
    TIGR04211
    Location:431515
    SH3_and_anchor; SH3 domain protein
    pfam09738
    Location:285639
    LRRFIP; LRRFIP family
    pfam11932
    Location:655714
    DUF3450; Protein of unknown function (DUF3450)
  27. XM_011243007.4XP_011241309.1  leucine-rich repeat flightless-interacting protein 2 isoform X8

    UniProtKB/TrEMBL
    A0A668KLE1
    Conserved Domains (3) summary
    TIGR04211
    Location:433517
    SH3_and_anchor; SH3 domain protein
    pfam09738
    Location:287641
    LRRFIP; LRRFIP family
    pfam11932
    Location:657716
    DUF3450; Protein of unknown function (DUF3450)
  28. XM_011243016.4XP_011241318.1  leucine-rich repeat flightless-interacting protein 2 isoform X18

    UniProtKB/TrEMBL
    A0A668KLE1
    Conserved Domains (3) summary
    TIGR04211
    Location:342426
    SH3_and_anchor; SH3 domain protein
    pfam09738
    Location:196550
    LRRFIP; LRRFIP family
    pfam11932
    Location:566625
    DUF3450; Protein of unknown function (DUF3450)
  29. XM_011243017.4XP_011241319.1  leucine-rich repeat flightless-interacting protein 2 isoform X19

    UniProtKB/TrEMBL
    A0A668KLE1
    Conserved Domains (3) summary
    TIGR04211
    Location:337421
    SH3_and_anchor; SH3 domain protein
    pfam09738
    Location:191545
    LRRFIP; LRRFIP family
    pfam11932
    Location:561620
    DUF3450; Protein of unknown function (DUF3450)
  30. XM_011243018.4XP_011241320.1  leucine-rich repeat flightless-interacting protein 2 isoform X21

    UniProtKB/TrEMBL
    A0A1L1SSC0
    Conserved Domains (3) summary
    TIGR04211
    Location:281365
    SH3_and_anchor; SH3 domain protein
    pfam09738
    Location:135489
    LRRFIP; LRRFIP family
    pfam11932
    Location:505564
    DUF3450; Protein of unknown function (DUF3450)
  31. XM_011243019.4XP_011241321.1  leucine-rich repeat flightless-interacting protein 2 isoform X23

    UniProtKB/TrEMBL
    A0A1L1SSC0
    Conserved Domains (3) summary
    TIGR04211
    Location:258342
    SH3_and_anchor; SH3 domain protein
    pfam09738
    Location:47466
    LRRFIP; LRRFIP family
    pfam11932
    Location:482541
    DUF3450; Protein of unknown function (DUF3450)
  32. XM_011243010.4XP_011241312.1  leucine-rich repeat flightless-interacting protein 2 isoform X11

    UniProtKB/TrEMBL
    A0A1L1SSC0
    Conserved Domains (3) summary
    TIGR04211
    Location:428512
    SH3_and_anchor; SH3 domain protein
    pfam09738
    Location:282636
    LRRFIP; LRRFIP family
    pfam11932
    Location:652711
    DUF3450; Protein of unknown function (DUF3450)
  33. XM_011243021.4XP_011241323.1  leucine-rich repeat flightless-interacting protein 2 isoform X27

    Conserved Domains (3) summary
    TIGR04211
    Location:221305
    SH3_and_anchor; SH3 domain protein
    pfam05266
    Location:404478
    DUF724; Protein of unknown function (DUF724)
    pfam09738
    Location:47429
    LRRFIP; LRRFIP family
  34. XM_011243011.4XP_011241313.1  leucine-rich repeat flightless-interacting protein 2 isoform X12

    UniProtKB/TrEMBL
    A0A1L1SSC0
    Related
    ENSMUSP00000149845.3, ENSMUST00000217341.3
    Conserved Domains (3) summary
    TIGR04211
    Location:413497
    SH3_and_anchor; SH3 domain protein
    pfam09738
    Location:267621
    LRRFIP; LRRFIP family
    pfam11932
    Location:637696
    DUF3450; Protein of unknown function (DUF3450)
  35. XM_011243020.4XP_011241322.1  leucine-rich repeat flightless-interacting protein 2 isoform X25

    Conserved Domains (3) summary
    TIGR04211
    Location:229313
    SH3_and_anchor; SH3 domain protein
    pfam05266
    Location:412486
    DUF724; Protein of unknown function (DUF724)
    pfam09738
    Location:47437
    LRRFIP; LRRFIP family
  36. XM_011243023.4XP_011241325.1  leucine-rich repeat flightless-interacting protein 2 isoform X30

    Conserved Domains (3) summary
    TIGR04211
    Location:206290
    SH3_and_anchor; SH3 domain protein
    pfam05266
    Location:389463
    DUF724; Protein of unknown function (DUF724)
    pfam09738
    Location:47414
    LRRFIP; LRRFIP family
  37. XM_011243022.4XP_011241324.1  leucine-rich repeat flightless-interacting protein 2 isoform X28

    Conserved Domains (1) summary
    pfam09738
    Location:319484
    LRRFIP; LRRFIP family
  38. XM_006512287.4XP_006512350.1  leucine-rich repeat flightless-interacting protein 2 isoform X29

    Conserved Domains (3) summary
    TIGR04211
    Location:212296
    SH3_and_anchor; SH3 domain protein
    pfam05266
    Location:395469
    DUF724; Protein of unknown function (DUF724)
    pfam09738
    Location:66420
    LRRFIP; LRRFIP family
  39. XM_030244598.2XP_030100458.1  leucine-rich repeat flightless-interacting protein 2 isoform X41

    UniProtKB/TrEMBL
    A0A1L1SQW1
    Related
    ENSMUSP00000149212.2, ENSMUST00000216430.2
    Conserved Domains (2) summary
    pfam09738
    Location:36301
    LRRFIP; LRRFIP family
    pfam11932
    Location:317376
    DUF3450; Protein of unknown function (DUF3450)
  40. XM_030244595.2XP_030100455.1  leucine-rich repeat flightless-interacting protein 2 isoform X37

    UniProtKB/TrEMBL
    Q8C062
    Related
    ENSMUST00000197540.5
    Conserved Domains (3) summary
    TIGR04211
    Location:155239
    SH3_and_anchor; SH3 domain protein
    pfam05266
    Location:338412
    DUF724; Protein of unknown function (DUF724)
    pfam09738
    Location:33363
    LRRFIP; LRRFIP family
  41. XM_030244599.2XP_030100459.1  leucine-rich repeat flightless-interacting protein 2 isoform X42

    UniProtKB/TrEMBL
    A0A1L1SQW1, A0A1L1SVG1
    Related
    ENSMUSP00000151145.2, ENSMUST00000217117.2
    Conserved Domains (2) summary
    pfam09738
    Location:33298
    LRRFIP; LRRFIP family
    pfam11932
    Location:314373
    DUF3450; Protein of unknown function (DUF3450)
  42. XM_030244597.1XP_030100457.1  leucine-rich repeat flightless-interacting protein 2 isoform X40

    UniProtKB/TrEMBL
    Q8C062
    Conserved Domains (2) summary
    pfam09738
    Location:13309
    LRRFIP; LRRFIP family
    pfam11932
    Location:325384
    DUF3450; Protein of unknown function (DUF3450)
  43. XM_006512290.2XP_006512353.1  leucine-rich repeat flightless-interacting protein 2 isoform X36

    UniProtKB/TrEMBL
    Q8C062
    Conserved Domains (3) summary
    TIGR04211
    Location:159243
    SH3_and_anchor; SH3 domain protein
    pfam05266
    Location:342416
    DUF724; Protein of unknown function (DUF724)
    pfam09738
    Location:13367
    LRRFIP; LRRFIP family