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Slc25a35 solute carrier family 25, member 35 [ Mus musculus (house mouse) ]

Gene ID: 71998, updated on 2-Nov-2024

Summary

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Official Symbol
Slc25a35provided by MGI
Official Full Name
solute carrier family 25, member 35provided by MGI
Primary source
MGI:MGI:1919248
See related
Ensembl:ENSMUSG00000018740 AllianceGenome:MGI:1919248
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1810012H11Rik
Summary
Located in mitochondrion. Is expressed in several structures, including alimentary system; brain; mammary gland; olfactory epithelium; and thymus. Orthologous to human SLC25A35 (solute carrier family 25 member 35). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in mammary gland adult (RPKM 33.7), ovary adult (RPKM 32.6) and 18 other tissues See more
Orthologs
human all
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Genomic context

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See Slc25a35 in Genome Data Viewer
Location:
11 B3; 11 42.24 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (68858954..68863342)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (68968096..68972516)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene Rho guanine nucleotide exchange factor 15 Neighboring gene predicted gene, 51902 Neighboring gene STARR-positive B cell enhancer ABC_E8415 Neighboring gene predicted gene, 32273 Neighboring gene STARR-positive B cell enhancer ABC_E2994 Neighboring gene STARR-positive B cell enhancer ABC_E11482 Neighboring gene RAN guanine nucleotide release factor Neighboring gene predicted gene, 32384 Neighboring gene phosphoribosylformylglycinamidine synthase (FGAR amidotransferase) Neighboring gene microRNA 3062

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Systematic screening for skin, hair, and nail abnormalities in a large-scale knockout mouse program. Sundberg JP, et al. PLoS One, 2017. PMID 28700664, Free PMC Article
  2. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
  3. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article
  4. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
  5. GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Visel A, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681479, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in mitochondrial inner membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
solute carrier family 25 member 35

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001418040.1 → NP_001404969.1  solute carrier family 25 member 35 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL603662

  2. NM_001418041.1 → NP_001404970.1  solute carrier family 25 member 35 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AL603662

  3. NM_001418042.1 → NP_001404971.1  solute carrier family 25 member 35 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AL603662
    UniProtKB/Swiss-Prot
    Q3TBP2, Q5SWT3, Q99KM5, Q9D913

  4. NM_001418043.1 → NP_001404972.1  solute carrier family 25 member 35 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AL603662

  5. NM_028048.3 → NP_082324.1  solute carrier family 25 member 35 isoform 1

    See identical proteins and their annotated locations for NP_082324.1

    Status: VALIDATED

    Source sequence(s)
    AL603662
    Consensus CDS
    CCDS24874.1
    UniProtKB/Swiss-Prot
    Q3TBP2, Q5SWT3, Q99KM5, Q9D913
    UniProtKB/TrEMBL
    A0A0A0MQ70
    Related
    ENSMUSP00000099666.4, ENSMUST00000102606.10
    Conserved Domains (1) summary
    pfam00153
    Location:2 → 84
    Mito_carr; Mitochondrial carrier protein

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    68858954..68863342
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5SWT3.2 GenPept UniProtKB/Swiss-Prot:Q5SWT3

Gene LinkOut

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