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1810055G02Rik RIKEN cDNA 1810055G02 gene [ Mus musculus (house mouse) ]

Gene ID: 72056, updated on 2-Nov-2024

Summary

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Official Symbol
1810055G02Rikprovided by MGI
Official Full Name
RIKEN cDNA 1810055G02 geneprovided by MGI
Primary source
MGI:MGI:1919306
See related
Ensembl:ENSMUSG00000035372 AllianceGenome:MGI:1919306
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be located in nucleoplasm. Predicted to be active in Golgi apparatus. Is expressed in several structures, including central nervous system; cranium; ganglia; jaw; and submandibular gland primordium. Orthologous to human C11orf24 (chromosome 11 open reading frame 24). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in testis adult (RPKM 90.7), small intestine adult (RPKM 75.0) and 27 other tissues See more
Orthologs
human all
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Genomic context

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See 1810055G02Rik in Genome Data Viewer
Location:
19 A; 19 3.44 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (3758343..3767882)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (3708293..3717882)

Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene low density lipoprotein receptor-related protein 5 Neighboring gene VISTA enhancer mm1719 Neighboring gene predicted gene, 36672 Neighboring gene predicted gene, 36608 Neighboring gene STARR-positive B cell enhancer ABC_E5671 Neighboring gene predicted gene, 36787 Neighboring gene STARR-seq mESC enhancer starr_45327 Neighboring gene ribosomal protein L17 pseudogene Neighboring gene STARR-seq mESC enhancer starr_45328 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:3767926-3768113 Neighboring gene STARR-positive B cell enhancer ABC_E5672 Neighboring gene lysine methyltransferase 5B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set. VanBuren V, et al. Genome Res, 2002 Dec. PMID 12466305, Free PMC Article
  2. Characterization of the piRNA complex from rat testes. Lau NC, et al. Science, 2006 Jul 21. PMID 16778019
  3. Systematic analysis of human protein complexes identifies chromosome segregation proteins. Hutchins JR, et al. Science, 2010 Apr 30. PMID 20360068, Free PMC Article
  4. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  5. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
  
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein C11orf24 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001358256.2 → NP_001345185.1  uncharacterized protein C11orf24 homolog precursor

    Status: VALIDATED

    Source sequence(s)
    AC132452
    Consensus CDS
    CCDS50342.1
    UniProtKB/Swiss-Prot
    Q8VCP2, Q9D8N1
    Related
    ENSMUSP00000158133.2, ENSMUST00000237955.2
    Conserved Domains (1) summary
    cl26464
    Location:104 → 329
    Atrophin-1; Atrophin-1 family

  2. NM_001358257.2 → NP_001345186.1  uncharacterized protein C11orf24 homolog precursor

    Status: VALIDATED

    Source sequence(s)
    AC132452
    Consensus CDS
    CCDS50342.1
    UniProtKB/Swiss-Prot
    Q8VCP2, Q9D8N1
    Related
    ENSMUSP00000158554.2, ENSMUST00000235837.2
    Conserved Domains (1) summary
    cl26464
    Location:104 → 329
    Atrophin-1; Atrophin-1 family

  3. NM_001358258.2 → NP_001345187.1  uncharacterized protein C11orf24 homolog precursor

    Status: VALIDATED

    Source sequence(s)
    AC132452
    Consensus CDS
    CCDS50342.1
    UniProtKB/Swiss-Prot
    Q8VCP2, Q9D8N1
    Related
    ENSMUSP00000157453.2, ENSMUST00000235295.2
    Conserved Domains (1) summary
    cl26464
    Location:104 → 329
    Atrophin-1; Atrophin-1 family

  4. NM_028077.4 → NP_082353.1  uncharacterized protein C11orf24 homolog precursor

    See identical proteins and their annotated locations for NP_082353.1

    Status: VALIDATED

    Source sequence(s)
    AC132452
    Consensus CDS
    CCDS50342.1
    UniProtKB/Swiss-Prot
    Q8VCP2, Q9D8N1
    Related
    ENSMUSP00000047063.2, ENSMUST00000039048.2
    Conserved Domains (1) summary
    cl26464
    Location:104 → 329
    Atrophin-1; Atrophin-1 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000085.7 Reference GRCm39 C57BL/6J

    Range
    3758343..3767882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D8N1.1 GenPept UniProtKB/Swiss-Prot:Q9D8N1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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