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Ccdc71l coiled-coil domain containing 71 like [ Mus musculus (house mouse) ]

Gene ID: 72123, updated on 4-Nov-2024

Summary

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Official Symbol
Ccdc71lprovided by MGI
Official Full Name
coiled-coil domain containing 71 likeprovided by MGI
Primary source
MGI:MGI:1919373
See related
Ensembl:ENSMUSG00000090946 AllianceGenome:MGI:1919373
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2010109K11Rik
Summary
Orthologous to human CCDC71L (coiled-coil domain containing 71 like). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human all
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Genomic context

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See Ccdc71l in Genome Data Viewer
Location:
12 A3; 12 13.74 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (32428788..32432942)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (32378789..32382943)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma Neighboring gene STARR-positive B cell enhancer ABC_E11507 Neighboring gene STARR-positive B cell enhancer ABC_E11508 Neighboring gene STARR-positive B cell enhancer ABC_E9855 Neighboring gene predicted gene, 33308 Neighboring gene STARR-seq mESC enhancer starr_31873 Neighboring gene STARR-positive B cell enhancer ABC_E5325 Neighboring gene predicted gene, 40375 Neighboring gene proline rich 11 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 71L

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001162903.1 → NP_001156375.1  coiled-coil domain-containing protein 71L

    Status: VALIDATED

    Source sequence(s)
    AC155255
    Consensus CDS
    CCDS49047.1
    UniProtKB/TrEMBL
    E9Q4T4
    Related
    ENSMUSP00000129581.3, ENSMUST00000172332.4
    Conserved Domains (1) summary
    pfam15374
    Location:32 → 109
    CCDC71L; Coiled-coil domain-containing protein 71L

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    32428788..32432942
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_028111.1: Suppressed sequence

    Description
    NM_028111.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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