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TRR-TCT2-1 tRNA-Arg (anticodon TCT) 2-1 [ Homo sapiens (human) ]

Gene ID: 7230, updated on 10-Oct-2023

Summary

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Official Symbol
TRR-TCT2-1provided by HGNC
Official Full Name
tRNA-Arg (anticodon TCT) 2-1provided by HGNC
Primary source
HGNC:HGNC:12343
See related
MIM:610406; AllianceGenome:HGNC:12343
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRR1; TRNAR1
Summary
Transfer RNA arginine-1 has an anticodon UCU (Morrison et al., 1991 [PubMed 2066114]).[supplied by OMIM, Sep 2009]
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
17p13.1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (8120925..8121012)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (8026300..8026387)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (8024243..8024330)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8153 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8154 Neighboring gene tRNA-Gln (anticodon CTG) 1-5 Neighboring gene tRNA-Leu (anticodon TAG) 1-1 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8155 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8156 Neighboring gene hes family bHLH transcription factor 7 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:8027282-8027802 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8157 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:8029079-8029880 Neighboring gene tRNA-Gly (anticodon GCC) 2-6 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8159 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11665 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:8036923-8037422 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8160 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8161 Neighboring gene tRNA-Ser (anticodon CGA) 1-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. An intron-containing tRNAArg gene within a large cluster of human tRNA genes. Bourn D, et al. DNA Seq, 1994. PMID 7703509
  2. Chromosomal assignment of a large tRNA gene cluster (tRNA(Leu), tRNA(Gln), tRNA(Lys), tRNA(Arg), tRNA(Gly)) to 17p13.1. Morrison N, et al. Hum Genet, 1991 Jun. PMID 2066114
  3. Physical map of 17p13 and the genes adjacent to p53. Cousin P, et al. Genomics, 2000 Jan 1. PMID 10662545

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • tRNA arginine (UCU) 1
  • tRNA arginine 1 (anticodon UCU)
  • tRNA-Arg-TCT-2-1
  • transfer RNA arginine 1 (anticodon UCU)
  • transfer RNA-Arg (TCT) 2-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    8120925..8121012
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    8026300..8026387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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