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2610316D01Rik RIKEN cDNA 2610316D01 gene [ Mus musculus (house mouse) ]

Gene ID: 72511, updated on 22-Oct-2024

Summary

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Official Symbol
2610316D01Rikprovided by MGI
Official Full Name
RIKEN cDNA 2610316D01 geneprovided by MGI
Primary source
MGI:MGI:1919761
See related
Ensembl:ENSMUSG00000097040 AllianceGenome:MGI:1919761
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Biased expression in CNS E14 (RPKM 6.4), CNS E18 (RPKM 6.4) and 7 other tissues See more
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Genomic context

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See 2610316D01Rik in Genome Data Viewer
Location:
3 B; 3 20.32 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (45234874..45332695, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (45280439..45378260, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 18866 Neighboring gene STARR-seq mESC enhancer starr_07536 Neighboring gene STARR-seq mESC enhancer starr_07537 Neighboring gene STARR-seq mESC enhancer starr_07538 Neighboring gene STARR-seq mESC enhancer starr_07539 Neighboring gene STARR-seq mESC enhancer starr_07541 Neighboring gene zinc finger protein 882 pseudogene Neighboring gene STARR-seq mESC enhancer starr_07542 Neighboring gene STARR-seq mESC enhancer starr_07543 Neighboring gene STARR-seq mESC enhancer starr_07544 Neighboring gene RIKEN cDNA 1700027H10 gene Neighboring gene protocadherin 10 Neighboring gene STARR-seq mESC enhancer starr_07545 Neighboring gene predicted gene, 32340 Neighboring gene predicted gene, 25796

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Non-coding RNA Neat1 and Abhd11os expressions are dysregulated in medium spiny neurons of Huntington disease model mice. Park H, et al. Neurosci Res, 2019 Oct. PMID 30391555
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_045172.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC158956, AK012035
    Related
    ENSMUST00000309920.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    45234874..45332695 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.