Skida1 SKI/DACH domain containing 1 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Skida1provided by MGI
Official Full Name: SKI/DACH domain containing 1provided by MGI
Primary source: MGI:MGI:1919918
See related: Ensembl:ENSMUSG00000054074 AllianceGenome:MGI:1919918
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: DLN-1; 2810030E01Rik; 5730507N06Rik
Summary: Is expressed in several structures, including body cavity or lining; genitourinary system; nervous system; respiratory system; and vertebral axis musculature. Orthologous to human SKIDA1 (SKI/DACH domain containing 1). [provided by Alliance of Genome Resources, Oct 2024]
Expression: Biased expression in CNS E11.5 (RPKM 6.0), CNS E14 (RPKM 3.5) and 13 other tissues See more
Orthologs: human all
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Genomic context

Location:: 2 A3; 2 12.83 cM

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	2	NC_000068.8 (18048510..18053627, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	2	NC_000068.7 (18044087..18048449, complement)

Chromosome 2 - NC_000068.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (1)
Targeted (2)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

BB088113 (e-PCR)
- UniSTS:185465

BB097487 (e-PCR)
- UniSTS:207291

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

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Preferred Names: SKI/DACH domain-containing protein 1

Names: protein DLN-1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_028317.4 → NP_082593.2 SKI/DACH domain-containing protein 1

See identical proteins and their annotated locations for NP_082593.2

Status: VALIDATED

Source sequence(s)

AL928589

Consensus CDS

CCDS57154.1

UniProtKB/Swiss-Prot

A6PWY1, A6PWY2, Q80YR3, Q9CSH2

UniProtKB/TrEMBL

G3X9M2

Related

ENSMUSP00000088982.6, ENSMUST00000091420.6

Conserved Domains (2) summary

pfam02437
Location:10 → 95

Ski_Sno; SKI/SNO/DAC family

pfam15223
Location:519 → 907

DUF4584; Domain of unknown function (DUF4584)