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TAB3-AS1 TAB3 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 727682, updated on 17-Sep-2024

Summary

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Official Symbol
TAB3-AS1provided by HGNC
Official Full Name
TAB3 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:20176
See related
AllianceGenome:HGNC:20176
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CXorf29
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Genomic context

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See TAB3-AS1 in Genome Data Viewer
Location:
Xp21.2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (30834623..30839073)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (30432835..30437284)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (30852740..30857190)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chrX:30771431-30772154 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:30813295-30813854 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20726 Neighboring gene myoneurin pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20727 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29510 Neighboring gene GK antisense RNA 1 Neighboring gene glycerol kinase Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29511 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29512 Neighboring gene TGF-beta activated kinase 1 (MAP3K7) binding protein 3 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29513 Neighboring gene Sharpr-MPRA regulatory region 11226 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20728 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29514 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20729 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20730 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29515 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29516 Neighboring gene Sharpr-MPRA regulatory region 5644 Neighboring gene ferritin heavy chain like 17 Neighboring gene dystrophin Neighboring gene RNA, U6 small nuclear 894, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • TAB3 antisense RNA 1 (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_145449.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC108359

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    30834623..30839073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    30432835..30437284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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