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SDHAP3 SDHA pseudogene 3 [ Homo sapiens (human) ]

Gene ID: 728609, updated on 22-Oct-2024

Summary

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Official Symbol
SDHAP3provided by HGNC
Official Full Name
SDHA pseudogene 3provided by HGNC
Primary source
HGNC:HGNC:18781
See related
Ensembl:ENSG00000291079 AllianceGenome:HGNC:18781
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SDHAL; SDHACL
Expression
Ubiquitous expression in heart (RPKM 17.8), duodenum (RPKM 11.8) and 25 other tissues See more
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Genomic context

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See SDHAP3 in Genome Data Viewer
Location:
5p15.33
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (1571957..1594531, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (1485931..1508537, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (1572072..1594646, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901161 Neighboring gene uncharacterized LOC107986397 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1550004-1550504 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1565824-1566805 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1575932-1576432 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1576433-1576933 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1592875-1593376 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1593377-1593876 Neighboring gene Sharpr-MPRA regulatory region 3968 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1603671-1604172 Neighboring gene PDCD6 pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:1607451-1607950 Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit 2-like Neighboring gene uncharacterized LOC112267946

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer. Wolpin BM, et al. Nat Genet, 2014 Sep. PMID 25086665, Free PMC Article
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study identifies multiple susceptibility loci for pancreatic cancer.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

Other Names

  • SDHA C-terminal like
  • succinate dehydrogenase complex flavoprotein subunit A pseudogene 3
  • succinate dehydrogenase complex, subunit A, flavoprotein pseudogene 3

Clone Names

  • MGC179707

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_003263.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC091849
    Related
    ENST00000721082.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    1571957..1594531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    1485931..1508537 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Chemical Information
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