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LOC728739 programmed cell death 2 pseudogene [ Homo sapiens (human) ]

Gene ID: 728739, updated on 17-Sep-2024

Summary

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Gene symbol
LOC728739
Gene description
programmed cell death 2 pseudogene
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC728739 in Genome Data Viewer
Location:
12q23.3
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (107903150..107903771, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (107867272..107867893, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (108296927..108297548, complement)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene ret finger protein like 2 pseudogene Neighboring gene ret finger protein like 3 pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4824 Neighboring gene uncharacterized LOC105369964 Neighboring gene NANOG hESC enhancer GRCh37_chr12:108434034-108434567 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_24094 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6957 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6958 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4825 Neighboring gene WSC domain containing 2 Neighboring gene uncharacterized LOC124903076

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris. Navarini AA, et al. Nat Commun, 2014 Jun 13. PMID 24927181
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study identifies three novel susceptibility loci for severe Acne vulgaris.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

General gene information

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Markers

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_037629.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    BE018697, DA161738

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    107903150..107903771 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    107867272..107867893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_021700.1: Suppressed sequence

    Description
    NG_021700.1: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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