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Marchf1 membrane associated ring-CH-type finger 1 [ Mus musculus (house mouse) ]

Gene ID: 72925, updated on 2-Nov-2024

Summary

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Official Symbol
Marchf1provided by MGI
Official Full Name
membrane associated ring-CH-type finger 1provided by MGI
Primary source
MGI:MGI:1920175
See related
Ensembl:ENSMUSG00000036469 AllianceGenome:MGI:1920175
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
March1; 2900024D24Rik
Summary
Enables ubiquitin protein ligase activity. Involved in antigen processing and presentation of peptide antigen via MHC class II; immune response; and protein polyubiquitination. Located in bounding membrane of organelle; endoplasmic reticulum membrane; and trans-Golgi network membrane. Is expressed in brain; glossopharyngeal ganglion; and spinal cord. Orthologous to human MARCHF1 (membrane associated ring-CH-type finger 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in CNS E18 (RPKM 3.6), spleen adult (RPKM 2.6) and 17 other tissues See more
Orthologs
human all
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Genomic context

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See Marchf1 in Genome Data Viewer
Location:
8 B3.1; 8 33.06 cM
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (66070558..66925761)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (65618009..66472841)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_21657 Neighboring gene STARR-seq mESC enhancer starr_21658 Neighboring gene STARR-seq mESC enhancer starr_21659 Neighboring gene predicted gene 7624 Neighboring gene vault RNA component pseudogene 1 Neighboring gene STARR-seq mESC enhancer starr_21660 Neighboring gene STARR-seq mESC enhancer starr_21661 Neighboring gene STARR-seq mESC enhancer starr_21663 Neighboring gene STARR-seq mESC enhancer starr_21664 Neighboring gene predicted gene, 23515 Neighboring gene STARR-seq mESC enhancer starr_21665 Neighboring gene STARR-seq mESC enhancer starr_21666 Neighboring gene ribosomal protein, large, P0 pseudogene Neighboring gene STARR-seq mESC enhancer starr_21667 Neighboring gene predicted gene, 26123 Neighboring gene predicted gene, 24205 Neighboring gene STARR-seq mESC enhancer starr_21668 Neighboring gene STARR-seq mESC enhancer starr_21669 Neighboring gene STARR-seq mESC enhancer starr_21670 Neighboring gene STARR-seq mESC enhancer starr_21671 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:69010363-69010546 Neighboring gene STARR-seq mESC enhancer starr_21673 Neighboring gene predicted gene, 32568 Neighboring gene translation machinery associated 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Ubiquitination of Major Histocompatibility Complex II Changes Its Immunological Recognition Structure. Kozono Y, et al. Int J Mol Sci, 2023 Dec 3. PMID 38069406, Free PMC Article
  2. Altered MARCH1 ubiquination-regulated dendritic cell immune functions during the early stage of zymosan-induced multiple organ dysfunction syndrome (MODS) in mice. Li F, et al. Immunol Lett, 2013 Feb. PMID 23305794
  3. MHC class II distribution in dendritic cells and B cells is determined by ubiquitin chain length. Ma JK, et al. Proc Natl Acad Sci U S A, 2012 Jun 5. PMID 22566640, Free PMC Article
  4. March1 E3 Ubiquitin Ligase Modulates Features of Allergic Asthma in an Ovalbumin-Induced Mouse Model of Lung Inflammation. Kishta OA, et al. J Immunol Res, 2018. PMID 29854835, Free PMC Article
  5. March1-dependent modulation of donor MHC II on CD103(+) dendritic cells mitigates alloimmunity. Borges TJ, et al. Nat Commun, 2018 Aug 28. PMID 30154416, Free PMC Article

See all (50) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. E3 ubiquitin ligase MARCH1 reduces inflammation and pyroptosis in cerebral ischemia-reperfusion injury via PCSK9 downregulation.
    Title: E3 ubiquitin ligase MARCH1 reduces inflammation and pyroptosis in cerebral ischemia-reperfusion injury via PCSK9 downregulation.
  2. Targeting psychological stress-steroid-MARCH1 signaling pathway promotes the efficacy of specific allergen immunotherapy.
    Title: Targeting psychological stress-steroid-MARCH1 signaling pathway promotes the efficacy of specific allergen immunotherapy.
  3. MARCH1 Controls an Exhaustion-like Program of Effector CD4(+) T Cells Promoting Allergic Airway Inflammation.
    Title: MARCH1 Controls an Exhaustion-like Program of Effector CD4(+) T Cells Promoting Allergic Airway Inflammation.
  4. Lymph node-resident dendritic cells drive TH2 cell development involving MARCH1.
    Title: Lymph node-resident dendritic cells drive T(H)2 cell development involving MARCH1.
  5. Lack of the E3 Ubiquitin Ligase March1 Affects CD8 T Cell Fate and Exacerbates Insulin Resistance in Obese Mice.
    Title: Lack of the E3 Ubiquitin Ligase March1 Affects CD8 T Cell Fate and Exacerbates Insulin Resistance in Obese Mice.
  6. The E3 ubiquitin ligase MARCH1 regulates antimalaria immunity through interferon signaling and T cell activation.
    Title: The E3 ubiquitin ligase MARCH1 regulates antimalaria immunity through interferon signaling and T cell activation.
  7. March1 ubiquitin-dependent MHCII turnover is critical to maintain homeostasis of lipid rafts and the tetraspanin web in dendritic cells.
    Title: MARCH1 protects the lipid raft and tetraspanin web from MHCII proteotoxicity in dendritic cells.
  8. Results show that MARCH1 deficiency results in sex-specific changes in body weight, adiposity, and increases glucose clearance. Genetic association study for MARCH1 in type 2 diabetes risk in publicly-available datasets found evidence suggestive of association. These data show a link between immune function and diabetes implicating MARCH1 as a regulator of lipid metabolism and glucose tolerance in sex-specific manner.
    Title: The E3 ubiquitin ligase MARCH1 regulates glucose-tolerance and lipid storage in a sex-specific manner.
  9. found downstream sequence elements, present in the first coding exon of March-I in antigen-presenting cells (APCs), that confer regulation of March-I expression in activated APCs
    Title: A major isoform of the E3 ubiquitin ligase March-I in antigen-presenting cells has regulatory sequences within its gene.
  10. unexpected intersection between MHC I and MHC II such that the surface expression of both molecules are indirectly and directly regulated by MARCH1 ubiquitination, respectively.
    Title: MARCH1-mediated ubiquitination of MHC II impacts the MHC I antigen presentation pathway.
Submit: New GeneRIF Correction See all GeneRIFs (26)

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (4) 
  • Targeted (1)  1 citation

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables MHC protein binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables MHC protein binding ISO
Inferred from Sequence Orthology
more info
  
enables MHC protein binding ISS
Inferred from Sequence or Structural Similarity
more info
  
enables ubiquitin protein ligase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ubiquitin protein ligase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables ubiquitin protein ligase activity ISO
Inferred from Sequence Orthology
more info
  
enables ubiquitin-protein transferase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in antigen processing and presentation of peptide antigen via MHC class II IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in antigen processing and presentation of peptide antigen via MHC class II IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in antigen processing and presentation of peptide antigen via MHC class II ISO
Inferred from Sequence Orthology
more info
  
involved_in immune response IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in immune response IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in immune response ISO
Inferred from Sequence Orthology
more info
  
involved_in protein polyubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein polyubiquitination IDA
Inferred from Direct Assay
more info
 PubMed 
involved_in protein polyubiquitination ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
  
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in early endosome membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in early endosome membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in early endosome membrane ISO
Inferred from Sequence Orthology
more info
  
located_in endoplasmic reticulum ISO
Inferred from Sequence Orthology
more info
  
located_in endoplasmic reticulum membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in endosome ISO
Inferred from Sequence Orthology
more info
  
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
  
is_active_in late endosome membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in late endosome membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in late endosome membrane ISO
Inferred from Sequence Orthology
more info
  
located_in lysosomal membrane IDA
Inferred from Direct Assay
more info
 PubMed 
is_active_in lysosome IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in lysosome ISO
Inferred from Sequence Orthology
more info
  
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
  
located_in plasma membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
located_in trans-Golgi network membrane IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase MARCHF1
Names
E3 ubiquitin-protein ligase MARCH1
MARCH-I
RING-type E3 ubiquitin transferase MARCH1
RING-type E3 ubiquitin transferase MARCHF1
membrane-associated RING finger protein 1
membrane-associated RING-CH protein I
membrane-associated ring finger (C3HC4) 1
NP_001159844.1
NP_001159847.1
NP_001280713.1
NP_001350052.1
NP_001350053.1
NP_001350054.1
NP_001390802.1
NP_001390803.1
NP_001390804.1
NP_001390805.1
NP_001390806.1
NP_001390807.1
NP_001390808.1
NP_001390809.1
NP_001390810.1
NP_001390811.1
NP_001390812.1
NP_001390813.1
NP_001390814.1
NP_001390815.1
NP_001390816.1
NP_001390818.1
NP_001390823.1
NP_780397.2
XP_006509817.1
XP_006509818.1
XP_030099653.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001166372.2 → NP_001159844.1  E3 ubiquitin-protein ligase MARCHF1 isoform 1

    See identical proteins and their annotated locations for NP_001159844.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) differs in the 5' UTR and uses an alternate in-frame splice junction in the 3' coding sequence compared to variant 4. The resulting isoform (1) has the same N- and C-termini but is shorter compared to isoform 4.
    Source sequence(s)
    AC114634, AC117251, AC122800, AC131655, AC140272
    Consensus CDS
    CCDS52560.1
    UniProtKB/Swiss-Prot
    Q6NZQ8
    Related
    ENSMUSP00000105884.2, ENSMUST00000110255.8
    Conserved Domains (1) summary
    cd16698
    Location:79 → 130
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  2. NM_001166375.1 → NP_001159847.1  E3 ubiquitin-protein ligase MARCHF1 isoform 2

    See identical proteins and their annotated locations for NP_001159847.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence and uses an alternate in-frame splice junction in the 3' coding sequence compared to variant 4. The resulting isoform (2) is shorter at the N-terminus and lacks an alternate internal segment compared to isoform 4.
    Source sequence(s)
    AK137337, AK152592, BB126406, BE686288, BM943350
    Consensus CDS
    CCDS52561.1
    UniProtKB/Swiss-Prot
    Q6NZQ8
    Conserved Domains (1) summary
    smart00744
    Location:69 → 117
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

  3. NM_001293784.2 → NP_001280713.1  E3 ubiquitin-protein ligase MARCHF1 isoform 4

    See identical proteins and their annotated locations for NP_001280713.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) encodes isoform 4.
    Source sequence(s)
    AC114634, AC117251, AC122800, AC131655, AC139159, AC140272
    Consensus CDS
    CCDS80884.1
    UniProtKB/Swiss-Prot
    Q3U7M8, Q3UVF8, Q6NZQ8, Q8C294, Q8CBA1
    Conserved Domains (2) summary
    smart00744
    Location:79 → 127
    RINGv; The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins
    pfam15245
    Location:40 → 102
    VGLL4; Transcription cofactor vestigial-like protein 4

  4. NM_001363123.2 → NP_001350052.1  E3 ubiquitin-protein ligase MARCHF1 isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR and coding sequence compared to variant 4.
    Source sequence(s)
    AC117251, AC122800, AC131655, AC139159, AC140272
    Consensus CDS
    CCDS22333.1
    Conserved Domains (1) summary
    cd16698
    Location:75 → 126
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  5. NM_001363124.2 → NP_001350053.1  E3 ubiquitin-protein ligase MARCHF1 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) uses an alternate in-frame splice junction compared to variant 4.
    Source sequence(s)
    AC114634, AC117251, AC122800, AC131655, AC139159, AC140272
    Consensus CDS
    CCDS52560.1
    Conserved Domains (1) summary
    cd16698
    Location:79 → 130
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  6. NM_001363125.2 → NP_001350054.1  E3 ubiquitin-protein ligase MARCHF1 isoform 5

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) differs in the 5' UTR and coding sequence and uses an alternate in-frame splice junction compared to variant 4. The resulting isoform (5) differs in the N-terminus and lacks an alternate internal segment compared to isoform 4.
    Source sequence(s)
    AC117251, AC122800, AC131655, AC139159, AC140272
    Conserved Domains (1) summary
    cd16698
    Location:75 → 126
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  7. NM_001403873.1 → NP_001390802.1  E3 ubiquitin-protein ligase MARCHF1 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC114634, AC122800, AC139159, AC140272
    UniProtKB/TrEMBL
    D3YVY0
    Related
    ENSMUSP00000105885.2, ENSMUST00000110256.8

  8. NM_001403874.1 → NP_001390803.1  E3 ubiquitin-protein ligase MARCHF1 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC117251, AC122800, AC131655, AC139159, AC140272

  9. NM_001403875.1 → NP_001390804.1  E3 ubiquitin-protein ligase MARCHF1 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC122800, AC139159, AC140272

  10. NM_001403876.1 → NP_001390805.1  E3 ubiquitin-protein ligase MARCHF1 isoform 8

    Status: VALIDATED

    Source sequence(s)
    AC114634, AC122800, AC139159, AC140272

  11. NM_001403877.1 → NP_001390806.1  E3 ubiquitin-protein ligase MARCHF1 isoform 9

    Status: VALIDATED

    Source sequence(s)
    AC122800, AC139159, AC140272

  12. NM_001403878.1 → NP_001390807.1  E3 ubiquitin-protein ligase MARCHF1 isoform 10

    Status: VALIDATED

    Source sequence(s)
    AC114634, AC117251, AC122800, AC131655, AC139159, AC140272

  13. NM_001403879.1 → NP_001390808.1  E3 ubiquitin-protein ligase MARCHF1 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC114634, AC117251, AC122800, AC131655, AC140272
    UniProtKB/Swiss-Prot
    Q3U7M8, Q3UVF8, Q6NZQ8, Q8C294, Q8CBA1
    Related
    ENSMUSP00000136545.2, ENSMUST00000178982.8

  14. NM_001403880.1 → NP_001390809.1  E3 ubiquitin-protein ligase MARCHF1 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC114634, AC117251, AC122800, AC131655, AC139159, AC140272
    UniProtKB/Swiss-Prot
    Q3U7M8, Q3UVF8, Q6NZQ8, Q8C294, Q8CBA1

  15. NM_001403881.1 → NP_001390810.1  E3 ubiquitin-protein ligase MARCHF1 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC114634, AC122800, AC139159, AC140272
    UniProtKB/Swiss-Prot
    Q3U7M8, Q3UVF8, Q6NZQ8, Q8C294, Q8CBA1

  16. NM_001403882.1 → NP_001390811.1  E3 ubiquitin-protein ligase MARCHF1 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC114634, AC122800, AC139159, AC140272
    UniProtKB/Swiss-Prot
    Q3U7M8, Q3UVF8, Q6NZQ8, Q8C294, Q8CBA1

  17. NM_001403883.1 → NP_001390812.1  E3 ubiquitin-protein ligase MARCHF1 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC122800, AC139159, AC140272

  18. NM_001403884.1 → NP_001390813.1  E3 ubiquitin-protein ligase MARCHF1 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC122800, AC139159, AC140272
    Related
    ENSMUSP00000072302.7, ENSMUST00000072482.13

  19. NM_001403885.1 → NP_001390814.1  E3 ubiquitin-protein ligase MARCHF1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC114634, AC122800, AC139159, AC140272

  20. NM_001403886.1 → NP_001390815.1  E3 ubiquitin-protein ligase MARCHF1 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC117251, AC122800, AC131655, AC139159, AC140272

  21. NM_001403887.1 → NP_001390816.1  E3 ubiquitin-protein ligase MARCHF1 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC122800, AC139159, AC140272

  22. NM_001403889.1 → NP_001390818.1  E3 ubiquitin-protein ligase MARCHF1 isoform 11

    Status: VALIDATED

    Source sequence(s)
    AC122800
    Related
    ENSMUSP00000105882.3, ENSMUST00000110253.3

  23. NM_001403894.1 → NP_001390823.1  E3 ubiquitin-protein ligase MARCHF1 isoform 12

    Status: VALIDATED

    Source sequence(s)
    AC122800
    Related
    ENSMUSP00000044070.6, ENSMUST00000039540.12

  24. NM_175188.5 → NP_780397.2  E3 ubiquitin-protein ligase MARCHF1 isoform 3

    See identical proteins and their annotated locations for NP_780397.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate first exon and lacks an alternate internal exon compared to variant 4. The resulting isoform (3) has a shorter and distinct N-terminus compared to isoform 4.
    Source sequence(s)
    AC117251, AC122800, AC131655, AC139159, AC140272
    Consensus CDS
    CCDS22333.1
    UniProtKB/Swiss-Prot
    Q6NZQ8
    Related
    ENSMUSP00000105888.2, ENSMUST00000110259.8
    Conserved Domains (1) summary
    cd16698
    Location:75 → 126
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    66070558..66925761
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030243793.2 → XP_030099653.1  E3 ubiquitin-protein ligase MARCHF1 isoform X5

    Conserved Domains (1) summary
    cd16698
    Location:75 → 126
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  2. XM_006509754.5 → XP_006509817.1  E3 ubiquitin-protein ligase MARCHF1 isoform X1

    Conserved Domains (1) summary
    cd16698
    Location:243 → 294
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins

  3. XM_006509755.3 → XP_006509818.1  E3 ubiquitin-protein ligase MARCHF1 isoform X2

    Conserved Domains (1) summary
    cd16698
    Location:243 → 294
    RING_CH-C4HC3_MARCH1_like; RING-CH finger, H2 subclass (C4HC3-type), found in membrane-associated RING finger protein MARCH1, MARCH8, and similar proteins
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6NZQ8.2 GenPept UniProtKB/Swiss-Prot:Q6NZQ8

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