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2210408F21Rik RIKEN cDNA 2210408F21 gene [ Mus musculus (house mouse) ]

Gene ID: 73652, updated on 22-Oct-2024

Summary

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Official Symbol
2210408F21Rikprovided by MGI
Official Full Name
RIKEN cDNA 2210408F21 geneprovided by MGI
Primary source
MGI:MGI:1920902
See related
Ensembl:ENSMUSG00000087380 AllianceGenome:MGI:1920902
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in heart adult (RPKM 5.4), cortex adult (RPKM 4.4) and 15 other tissues See more
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Genomic context

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See 2210408F21Rik in Genome Data Viewer
Location:
6 A3.3; 6 12.56 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (31197286..31314330)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (31220351..31337395)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene microRNA 29b-1 Neighboring gene STARR-seq mESC enhancer starr_15479 Neighboring gene STARR-positive B cell enhancer ABC_E11314 Neighboring gene STARR-positive B cell enhancer ABC_E6423 Neighboring gene long non-protein coding RNA, Trp53 induced transcript Neighboring gene STARR-positive B cell enhancer mm9_chr6:31119400-31119700 Neighboring gene STARR-positive B cell enhancer ABC_E8097 Neighboring gene STARR-seq mESC enhancer starr_15481 Neighboring gene proteasome (prosome, macropain) subunit, alpha type 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_15482 Neighboring gene STARR-seq mESC enhancer starr_15483 Neighboring gene STARR-positive B cell enhancer ABC_E4819 Neighboring gene predicted gene, 38782 Neighboring gene STARR-seq mESC enhancer starr_15487 Neighboring gene muskelin 1, intracellular mediator containing kelch motifs, opposite strand Neighboring gene muskelin 1, intracellular mediator containing kelch motifs Neighboring gene STARR-seq mESC enhancer starr_15489 Neighboring gene STARR-seq mESC enhancer starr_15490 Neighboring gene podocalyxin-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The 2210408F21Rik/miR-1968-5p/Hras axis regulates synapse-related proteins in a mouse model of depressive-like behaviors through a ceRNA mechanism. Zhu J, et al. Behav Brain Res, 2023 Jun 5. PMID 37075955
  2. A noncoding RNA modulator potentiates phenylalanine metabolism in mice. Li Y, et al. Science, 2021 Aug 6. PMID 34353949, Free PMC Article
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The 2210408F21Rik/miR-1968-5p/Hras axis regulates synapse-related proteins in a mouse model of depressive-like behaviors through a ceRNA mechanism.
    Title: The 2210408F21Rik/miR-1968-5p/Hras axis regulates synapse-related proteins in a mouse model of depressive-like behaviors through a ceRNA mechanism.
  2. A noncoding RNA modulator potentiates phenylalanine metabolism in mice.
    Title: A noncoding RNA modulator potentiates phenylalanine metabolism in mice.
Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Readthrough Mkln1

Readthrough gene: Mkln1

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040257.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC024913, AC158658
    Related
    ENSMUST00000346018.1

  2. NR_040258.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an internal exon, compared to variant 1.
    Source sequence(s)
    AC158658, BC099512, BY241377
    Related
    ENSMUST00000345996.1

  3. NR_040259.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site and lacks two internal exons, compared to variant 1.
    Source sequence(s)
    AA427326, AC158658, BY241377
    Related
    ENSMUST00000153057.10

  4. NR_040260.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) lacks two internal exons, compared to variant 1.
    Source sequence(s)
    AC158658, AK008857, BY241377
    Related
    ENSMUST00000246402.2

  5. NR_040261.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) lacks two internal exons, compared to variant 1.
    Source sequence(s)
    AC158658, AW105955, BY241377
    Related
    ENSMUST00000241528.2

  6. NR_040262.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) uses an alternate splice site and lacks two internal exons, compared to variant 1.
    Source sequence(s)
    AC158658, BY241377, BY261359
    Related
    ENSMUST00000144612.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    31197286..31314330
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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