NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001038641.2 → NP_001033730.1 protein SLX4IP isoform 1
See identical proteins and their annotated locations for NP_001033730.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same isoform (1).
- Source sequence(s)
-
AK136226, AL713981, BC067037
- Consensus CDS
-
CCDS16795.1
- UniProtKB/Swiss-Prot
- Q6NXK0, Q9CWT7, Q9D7Y9
- Conserved Domains (1) summary
-
- pfam15744
Location:10 → 363
- UPF0492; Uncharacterized protein family UPF0492
-
NM_001355669.1 → NP_001342598.1 protein SLX4IP isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) lacks an alternate coding exon compared to variant 1, that causes a frameshift. The resulting isoform (3) has a shorter and distinct C-terminus compared to isoform 1. Variants 4, 5, and 6 all encode the same isoform (3).
- Source sequence(s)
-
AL713981, AL731706, BB619962, BC067037
- Conserved Domains (1) summary
-
- pfam15744
Location:10 → 39
- UPF0492; Uncharacterized protein family UPF0492
-
NM_001355670.1 → NP_001342599.1 protein SLX4IP isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR and lacks an alternate coding exon compared to variant 1, that causes a frameshift. The resulting isoform (3) has a shorter and distinct C-terminus compared to isoform 1. Variants 4, 5, and 6 all encode the same isoform (3).
- Source sequence(s)
-
AL713981, AL731706, BC067037
- Related
-
ENSMUST00000135260.8
- Conserved Domains (1) summary
-
- pfam15744
Location:10 → 39
- UPF0492; Uncharacterized protein family UPF0492
-
NM_001355671.1 → NP_001342600.1 protein SLX4IP isoform 3
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR and lacks an alternate coding exon compared to variant 1, that causes a frameshift. The resulting isoform (3) has a shorter and distinct C-terminus compared to isoform 1.
- Source sequence(s)
-
AL713981, AL731706, BC067037, BG080315
- Conserved Domains (1) summary
-
- pfam15744
Location:10 → 39
- UPF0492; Uncharacterized protein family UPF0492
-
NM_028201.3 → NP_082477.1 protein SLX4IP isoform 2
See identical proteins and their annotated locations for NP_082477.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR and lacks two alternate coding exons compared to variant 1. The resulting isoform (2) has the same N- and C-termini, is shorter, and contains an alternate internal segment compared to isoform 1.
- Source sequence(s)
-
AK010392, AL713981, BC067037
- Consensus CDS
-
CCDS16796.1
- UniProtKB/Swiss-Prot
-
Q9D7Y9
- Related
- ENSMUSP00000028737.7, ENSMUST00000028737.13
- Conserved Domains (1) summary
-
- pfam15744
Location:10 → 293
- UPF0492; Uncharacterized protein family UPF0492
-
NM_028834.3 → NP_083110.1 protein SLX4IP isoform 1
See identical proteins and their annotated locations for NP_083110.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1). Variants 1 and 2 both encode the same isoform (1).
- Source sequence(s)
-
AK008687, AL713981, AL731706, BC067037
- Consensus CDS
-
CCDS16795.1
- UniProtKB/Swiss-Prot
- Q6NXK0, Q9CWT7, Q9D7Y9
- Related
- ENSMUSP00000096914.3, ENSMUST00000099311.9
- Conserved Domains (1) summary
-
- pfam15744
Location:10 → 363
- UPF0492; Uncharacterized protein family UPF0492
RNA
-
NR_149746.1 RNA Sequence
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) differs in the 5' end, contains two alternate exons, and lacks another alternate exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AL713981, AL731706
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000068.8 Reference GRCm39 C57BL/6J
- Range
-
136733138..136923273
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_011239814.3 → XP_011238116.1 protein SLX4IP isoform X3
See identical proteins and their annotated locations for XP_011238116.1
- Conserved Domains (1) summary
-
- pfam15744
Location:10 → 134
- UPF0492; Uncharacterized protein family UPF0492
-
XM_036162636.1 → XP_036018529.1 protein SLX4IP isoform X1
- UniProtKB/Swiss-Prot
- Q6NXK0, Q9CWT7, Q9D7Y9
- Conserved Domains (1) summary
-
- pfam15744
Location:10 → 363
- UPF0492; Uncharacterized protein family UPF0492
-
XM_036162639.1 → XP_036018532.1 protein SLX4IP isoform X4
- Conserved Domains (1) summary
-
- pfam15744
Location:10 → 39
- UPF0492; Uncharacterized protein family UPF0492
-
XM_036162638.1 → XP_036018531.1 protein SLX4IP isoform X2
- Conserved Domains (1) summary
-
- pfam15744
Location:10 → 293
- UPF0492; Uncharacterized protein family UPF0492
-
XM_011239811.3 → XP_011238113.1 protein SLX4IP isoform X1
See identical proteins and their annotated locations for XP_011238113.1
- UniProtKB/Swiss-Prot
- Q6NXK0, Q9CWT7, Q9D7Y9
- Conserved Domains (1) summary
-
- pfam15744
Location:10 → 363
- UPF0492; Uncharacterized protein family UPF0492
-
XM_036162640.1 → XP_036018533.1 protein SLX4IP isoform X4
- Conserved Domains (1) summary
-
- pfam15744
Location:10 → 39
- UPF0492; Uncharacterized protein family UPF0492
-
XM_036162637.1 → XP_036018530.1 protein SLX4IP isoform X1
- UniProtKB/Swiss-Prot
- Q6NXK0, Q9CWT7, Q9D7Y9
- Related
- ENSMUSP00000136131.2, ENSMUST00000180277.3
- Conserved Domains (1) summary
-
- pfam15744
Location:10 → 363
- UPF0492; Uncharacterized protein family UPF0492