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Armc1 armadillo repeat containing 1 [ Mus musculus (house mouse) ]

Gene ID: 74252, updated on 2-Nov-2024

Summary

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Official Symbol
Armc1provided by MGI
Official Full Name
armadillo repeat containing 1provided by MGI
Primary source
MGI:MGI:1921502
See related
Ensembl:ENSMUSG00000027599 AllianceGenome:MGI:1921502
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Arcp; 2310016N05Rik; 2900046P06Rik; 3110009G21Rik; C330014L16Rik
Summary
Predicted to enable metal ion binding activity. Predicted to be involved in intracellular distribution of mitochondria. Located in mitochondrion. Orthologous to human ARMC1 (armadillo repeat containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in CNS E18 (RPKM 11.8), bladder adult (RPKM 11.4) and 25 other tissues See more
Orthologs
human all
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Genomic context

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See Armc1 in Genome Data Viewer
Location:
3 A2; 3 5.36 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (19185566..19219225, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (19131402..19163095, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_07081 Neighboring gene predicted gene, 30789 Neighboring gene STARR-seq mESC enhancer starr_07082 Neighboring gene STARR-seq mESC enhancer starr_07083 Neighboring gene STARR-seq mESC enhancer starr_07084 Neighboring gene predicted gene, 30341 Neighboring gene STARR-seq mESC enhancer starr_07085 Neighboring gene STARR-seq mESC enhancer starr_07087 Neighboring gene STARR-positive B cell enhancer ABC_E334 Neighboring gene STARR-positive B cell enhancer ABC_E3427 Neighboring gene STARR-seq mESC enhancer starr_07090 Neighboring gene mitochondrial fission regulator 1 Neighboring gene STARR-seq mESC enhancer starr_07091 Neighboring gene RIKEN cDNA 3110037C07 gene Neighboring gene phosphodiesterase 7A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Armadillo-repeat protein functions: questions for little creatures. Tewari R, et al. Trends Cell Biol, 2010 Aug. PMID 20688255
  2. The armadillo family of structural proteins. Hatzfeld M. Int Rev Cytol, 1999. PMID 9770300
  3. Cloning and expression of a novel armadillo motif containing gene in Xenopus. Chang JY, et al. Mech Dev, 2002 Dec. PMID 14516665
  4. A global genomic transcriptional code associated with CNS-expressed genes. Bailey PJ, et al. Exp Cell Res, 2006 Oct 1. PMID 16919269
  5. A mitochondrial protein compendium elucidates complex I disease biology. Pagliarini DJ, et al. Cell, 2008 Jul 11. PMID 18614015, Free PMC Article

See all (21) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in intracellular distribution of mitochondria IEA
Inferred from Electronic Annotation
more info
  
involved_in intracellular distribution of mitochondria ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion HDA PubMed 
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
armadillo repeat-containing protein 1
Names
armadillo repeat containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357689.1 → NP_001344618.1  armadillo repeat-containing protein 1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC127283, BF464987
    Conserved Domains (1) summary
    smart00185
    Location:32 → 67
    ARM; Armadillo/beta-catenin-like repeats

  2. NM_028840.3 → NP_083116.1  armadillo repeat-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_083116.1

    Status: VALIDATED

    Source sequence(s)
    AC127283, AK034483, AK082783, BF464987, BY165551
    Consensus CDS
    CCDS17255.1
    UniProtKB/Swiss-Prot
    Q8CBW1, Q9D7A8
    Related
    ENSMUSP00000029125.9, ENSMUST00000029125.10
    Conserved Domains (1) summary
    pfam00514
    Location:27 → 67
    Arm; Armadillo/beta-catenin-like repeat

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    19185566..19219225 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030252846.2 → XP_030108706.1  armadillo repeat-containing protein 1 isoform X1

    UniProtKB/Swiss-Prot
    Q8CBW1, Q9D7A8
    Conserved Domains (1) summary
    pfam00514
    Location:27 → 67
    Arm; Armadillo/beta-catenin-like repeat
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D7A8.1 GenPept UniProtKB/Swiss-Prot:Q9D7A8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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