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THAPSDRAFT_31673 lipoic acid synthetase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7453454, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_31673
Gene description
lipoic acid synthetase
Locus tag
THAPSDRAFT_31673
Gene type
protein coding
RNA name
lipoic acid synthetase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_31673 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_012064.1 (780995..782002, complement)

Chromosome 1 - NC_012064.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene rubisco small subunit small subunit n-methyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012064.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4 iron, 4 sulfur cluster binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipoate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipoate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
lipoic acid synthetase
XP_002286650.1
  • Putative lipoic acid synthetase (lipoate synthase), similar to gi|23482377|gb|EAA18375.1| lipoic acid synthetase, putative [Plasmodium yoelii yoelii] (model%: 99, hit%: 59, score: 1118, %id: 65) [Plasmodium yoelii yoelii]

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012064.1 Reference assembly

    Range
    780995..782002 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002286614.1 → XP_002286650.1  lipoic acid synthetase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002286650.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BQ31
    Conserved Domains (3) summary
    cd01335
    Location:67 → 270
    Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
    PRK05481
    Location:8 → 295
    PRK05481; lipoyl synthase; Provisional
    pfam16881
    Location:11 → 52
    LIAS_N; N-terminal domain of lipoyl synthase of Radical_SAM family
Nucleotide Protein
Heading Accession and Version

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Research Materials