U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

THAPSDRAFT_31001 pyrimidine-nucleoside phosphorylase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7453461, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
THAPSDRAFT_31001
Gene description
pyrimidine-nucleoside phosphorylase
Locus tag
THAPSDRAFT_31001
Gene type
protein coding
RNA name
pyrimidine-nucleoside phosphorylase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See THAPSDRAFT_31001 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Sequence:
Chromosome: 1; NC_012064.1 (806731..808193)

Chromosome 1 - NC_012064.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_012064.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-alpha-oligoglucan phosphorylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pyrimidine-nucleoside phosphorylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pyrimidine nucleobase metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pyrimidine nucleoside metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Names
pyrimidine-nucleoside phosphorylase
XP_002286081.1
  • Putative pyrimidine-nucleoside phosphorylase, similar to Pyrimidine Nucleoside Phosphorylase (model%: 92, hit%: 97, score: 832, %id: 43) [Geobacillus stearothermophilus]

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012064.1 Reference assembly

    Range
    806731..808193
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002286045.1 → XP_002286081.1  pyrimidine-nucleoside phosphorylase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002286081.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BQ44
    Conserved Domains (4) summary
    TIGR02644
    Location:16 → 445
    Y_phosphoryl; pyrimidine-nucleoside phosphorylase
    pfam00591
    Location:97 → 343
    Glycos_transf_3; Glycosyl transferase family, a/b domain
    pfam02885
    Location:19 → 79
    Glycos_trans_3N; Glycosyl transferase family, helical bundle domain
    pfam07831
    Location:383 → 456
    PYNP_C; Pyrimidine nucleoside phosphorylase C-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials