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THAPSDRAFT_260832 signal peptidase [ Thalassiosira pseudonana CCMP1335 ]

Gene ID: 7453468, updated on 21-Dec-2023

Summary

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Gene symbol
THAPSDRAFT_260832
Gene description
signal peptidase
Locus tag
THAPSDRAFT_260832
Gene type
protein coding
RNA name
signal peptidase
RefSeq status
PROVISIONAL
Organism
Thalassiosira pseudonana CCMP1335 (strain: CCMP1335)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira
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Genomic context

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See THAPSDRAFT_260832 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Sequence:
Chromosome: 1; NC_012064.1 (849168..849775)

Chromosome 1 - NC_012064.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012064.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Armbrust EV, et al. Science, 2004 Oct 1. PMID 15459382
  2. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in signal peptide processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
signal peptidase
XP_002286089.1
  • Putative signal peptidase; similar to gi|6225603|sp|P72660|LEP1_SYNY3 Probable signal peptidase I-1 (SPase I-1) (Leader peptidase I-1) (model%: 100, hit%: 83, score: 215, %id: 37) [Synechocystis sp. PCC 6803]

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012064.1 Reference assembly

    Range
    849168..849775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002286053.1 → XP_002286089.1  signal peptidase, partial [Thalassiosira pseudonana CCMP1335]

    See identical proteins and their annotated locations for XP_002286089.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8BQ59
    Conserved Domains (2) summary
    cd06530
    Location:12 → 142
    S26_SPase_I; The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3.4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are ...
    TIGR02227
    Location:10 → 148
    sigpep_I_bact; signal peptidase I, bacterial type
Nucleotide Protein
Heading Accession and Version

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