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J3U91_RS05510 GIY-YIG nuclease family protein [ Oenococcus oeni ]

Gene ID: 75065953, updated on 30-Mar-2024

Summary

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Gene symbol
J3U91_RS05510
Gene description
GIY-YIG nuclease family protein
Locus tag
J3U91_RS05510
Gene type
protein coding
Organism
Oenococcus oeni (strain: AWRIB429)
Lineage
Bacteria; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Oenococcus
Old locus tag
J3U91_01137
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Genomic context

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NZ_CP084701.1Genomic Context describing neighboring genes Neighboring gene translation elongation factor Ts Neighboring gene 30S ribosomal protein S2 Neighboring gene 1-acyl-sn-glycerol-3-phosphate acyltransferase Neighboring gene YneF family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NZ_CP084701.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Catalytic domain structure and hypothesis for function of GIY-YIG intron endonuclease I-TevI. Van Roey P, et al. Nat Struct Biol, 2002 Nov. PMID 12379841
  2. Configuration of the catalytic GIY-YIG domain of intron endonuclease I-TevI: coincidence of computational and molecular findings. Kowalski JC, et al. Nucleic Acids Res, 1999 May 15. PMID 10219084, Free PMC Article
  3. Conserved domains in DNA repair proteins and evolution of repair systems. Aravind L, et al. Nucleic Acids Res, 1999 Mar 1. PMID 9973609, Free PMC Article
  4. Identification of a family of bacteriophage T4 genes encoding proteins similar to those present in group I introns of fungi and phage. Sharma M, et al. Proc Natl Acad Sci U S A, 1992 Jul 15. PMID 1631169, Free PMC Article
  5. Phylogenomic analysis of the GIY-YIG nuclease superfamily. Dunin-Horkawicz S, et al. BMC Genomics, 2006 Apr 28. PMID 16646971, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
GIY-YIG nuclease family protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NZ_CP084701.1 Reference assembly

    Range
    1047657..1048649 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_002820491.1 GIY-YIG nuclease family protein [Oenococcus oeni]

    See identical proteins and their annotated locations for WP_002820491.1

    UniProtKB/TrEMBL
    A0NJ82, D3L9B9
    Conserved Domains (2) summary
    cl15257
    Location:249 → 328
    GIY-YIG_SF; GIY-YIG nuclease domain superfamily
    cl17173
    Location:15 → 253
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
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