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Ccdc83 coiled-coil domain containing 83 [ Mus musculus (house mouse) ]

Gene ID: 75338, updated on 28-Oct-2024

Summary

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Official Symbol
Ccdc83provided by MGI
Official Full Name
coiled-coil domain containing 83provided by MGI
Primary source
MGI:MGI:1918255
See related
Ensembl:ENSMUSG00000030617 AllianceGenome:MGI:1918255
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930549K11Rik; 4930554C01Rik; 4932423M01Rik
Summary
Orthologous to human CCDC83 (coiled-coil domain containing 83). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Restricted expression toward testis adult (RPKM 4.4) See more
Orthologs
human all
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Genomic context

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See Ccdc83 in Genome Data Viewer
Location:
7 D3; 7 50.48 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (89872641..89914640, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (90223500..90265432, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2310010J17 gene Neighboring gene basic transcription factor 3, pseudogene 5 Neighboring gene STARR-positive B cell enhancer ABC_E4948 Neighboring gene STARR-positive B cell enhancer ABC_E3731 Neighboring gene phosphatidylinositol binding clathrin assembly protein Neighboring gene synaptotagmin-like 2 Neighboring gene STARR-seq mESC enhancer starr_19508 Neighboring gene STARR-seq mESC enhancer starr_19509 Neighboring gene STARR-seq mESC enhancer starr_19510 Neighboring gene STARR-seq mESC enhancer starr_19511 Neighboring gene coiled-coil domain containing 89

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 83

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029256.3 → NP_083532.1  coiled-coil domain-containing protein 83 isoform 2

    See identical proteins and their annotated locations for NP_083532.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AC158781
    Consensus CDS
    CCDS21446.1
    UniProtKB/Swiss-Prot
    Q8CEQ7, Q9D4V3, Q9D4W3
    UniProtKB/TrEMBL
    D3YUZ1
    Related
    ENSMUSP00000047758.2, ENSMUST00000040413.2
    Conserved Domains (1) summary
    cl19219
    Location:43 → 133
    DUF342; Protein of unknown function (DUF342)

  2. NM_183293.1 → NP_899116.1  coiled-coil domain-containing protein 83 isoform 1

    See identical proteins and their annotated locations for NP_899116.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1).
    Source sequence(s)
    AC158781, AK016114, AK016535
    Consensus CDS
    CCDS57561.1
    UniProtKB/TrEMBL
    D3YUZ0
    Related
    ENSMUSP00000102839.2, ENSMUST00000107221.9
    Conserved Domains (2) summary
    COG1196
    Location:34 → 296
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK00409
    Location:34 → 135
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed

RNA

  1. NR_111924.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice junction at the 5' end of an exon and differs in the 3' end compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AC158781, AK016114, BC145034

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    89872641..89914640 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006508277.5 → XP_006508340.1  coiled-coil domain-containing protein 83 isoform X1

    See identical proteins and their annotated locations for XP_006508340.1

    UniProtKB/TrEMBL
    D3YUZ0
    Conserved Domains (2) summary
    COG1196
    Location:34 → 296
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    PRK00409
    Location:34 → 135
    PRK00409; recombination and DNA strand exchange inhibitor protein; Reviewed
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D4V3.1 GenPept UniProtKB/Swiss-Prot:Q9D4V3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
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