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Ccdc192 coiled-coil domain containing 192 [ Mus musculus (house mouse) ]

Gene ID: 75444, updated on 2-Nov-2024

Summary

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Official Symbol
Ccdc192provided by MGI
Official Full Name
coiled-coil domain containing 192provided by MGI
Primary source
MGI:MGI:1922694
See related
Ensembl:ENSMUSG00000058925 AllianceGenome:MGI:1922694
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700011I03Rik; 4930583I06Rik
Summary
Orthologous to human CCDC192 (coiled-coil domain containing 192). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 19.4) See more
Orthologs
human all
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Genomic context

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See Ccdc192 in Genome Data Viewer
Location:
18 D3; 18 32.15 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (57666814..57864139)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (57533742..57731067)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34982 Neighboring gene RIKEN cDNA 1700066O22 gene Neighboring gene cortexin 3 Neighboring gene RIKEN cDNA 4930511M06 gene Neighboring gene ribonuclease/angiogenin inhibitor 1 pseudogene Neighboring gene RIKEN cDNA 2210409D07 gene Neighboring gene STARR-positive B cell enhancer ABC_E3229 Neighboring gene STARR-seq mESC enhancer starr_44690 Neighboring gene STARR-seq mESC enhancer starr_44691 Neighboring gene predicted gene, 26038 Neighboring gene STARR-seq mESC enhancer starr_44692 Neighboring gene predicted gene, 19519 Neighboring gene predicted gene, 35751

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identification and integrative analysis of 28 novel genes specifically expressed and developmentally regulated in murine spermatogenic cells. Hong S, et al. J Biol Chem, 2005 Mar 4. PMID 15613475
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 192

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001311063.2 → NP_001297992.2  coiled-coil domain-containing protein 192 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an exon in the 3' coding region, which results in a frameshift compared to variant 1. The encoded isoform (2) has a shorter and distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AC102232, AC152398
    Consensus CDS
    CCDS79645.1
    UniProtKB/TrEMBL
    D3YYW6
    Related
    ENSMUSP00000115752.3, ENSMUST00000135806.8

  2. NM_001406366.1 → NP_001393295.1  coiled-coil domain-containing protein 192 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC102232, AC152398

  3. NM_029290.2 → NP_083566.2  coiled-coil domain-containing protein 192 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC102232, AC152398
    Consensus CDS
    CCDS50295.1
    UniProtKB/TrEMBL
    E9PYL8
    Related
    ENSMUSP00000078674.5, ENSMUST00000079738.10

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    57666814..57864139
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017318003.2 → XP_017173492.1  coiled-coil domain-containing protein 192 isoform X1

    UniProtKB/TrEMBL
    Q9DAG0

  2. XM_030250625.1 → XP_030106485.1  coiled-coil domain-containing protein 192 isoform X3

  3. XM_030250624.1 → XP_030106484.1  coiled-coil domain-containing protein 192 isoform X2

  4. XM_030250626.1 → XP_030106486.1  coiled-coil domain-containing protein 192 isoform X4

Nucleotide Protein Strain
Heading Accession and Version

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