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Spata9 spermatogenesis associated 9 [ Mus musculus (house mouse) ]

Gene ID: 75571, updated on 2-Nov-2024

Summary

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Official Symbol
Spata9provided by MGI
Official Full Name
spermatogenesis associated 9provided by MGI
Primary source
MGI:MGI:1922821
See related
Ensembl:ENSMUSG00000021590 AllianceGenome:MGI:1922821
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700030K01Rik; 4930599C08Rik; A930023H06Rik
Summary
Predicted to be involved in cell differentiation and spermatogenesis. Predicted to be located in membrane. Orthologous to human SPATA9 (spermatogenesis associated 9). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 16.0) and CNS E18 (RPKM 0.4) See more
Orthologs
human all
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Genomic context

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See Spata9 in Genome Data Viewer
Location:
13 C1; 13 40.95 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (76108113..76147106)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (75959970..75998987)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene Rho-related BTB domain containing 3 Neighboring gene WD repeat domain 77 pseudogene Neighboring gene ribosomal protein S2 pseudogene Neighboring gene predicted gene, 23319 Neighboring gene STARR-positive B cell enhancer mm9_chr13:76130188-76130489 Neighboring gene Rieske (Fe-S) domain containing Neighboring gene STARR-seq mESC enhancer starr_35056 Neighboring gene STARR-positive B cell enhancer ABC_E11548 Neighboring gene 60S ribosomal protein L36a-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. NYD-SP16, a novel gene associated with spermatogenesis of human testis. Cheng LJ, et al. Biol Reprod, 2003 Jan. PMID 12493713
  2. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
  
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
spermatogenesis-associated protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029343.3 → NP_083619.1  spermatogenesis-associated protein 9

    See identical proteins and their annotated locations for NP_083619.1

    Status: PROVISIONAL

    Source sequence(s)
    AC122242
    Consensus CDS
    CCDS26653.1
    UniProtKB/Swiss-Prot
    Q9D4M8, Q9D9R3
    Related
    ENSMUSP00000022081.2, ENSMUST00000022081.3
    Conserved Domains (1) summary
    pfam15824
    Location:1 → 252
    SPATA9; Spermatogenesis-associated protein 9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    76108113..76147106
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030247441.2 → XP_030103301.1  spermatogenesis-associated protein 9 isoform X5

    Conserved Domains (1) summary
    pfam15824
    Location:1 → 158
    SPATA9; Spermatogenesis-associated protein 9

  2. XM_006517442.4 → XP_006517505.1  spermatogenesis-associated protein 9 isoform X1

    See identical proteins and their annotated locations for XP_006517505.1

    UniProtKB/Swiss-Prot
    Q9D4M8, Q9D9R3
    Conserved Domains (1) summary
    pfam15824
    Location:1 → 252
    SPATA9; Spermatogenesis-associated protein 9

  3. XM_006517444.5 → XP_006517507.1  spermatogenesis-associated protein 9 isoform X2

    Conserved Domains (1) summary
    pfam15824
    Location:1 → 224
    SPATA9; Spermatogenesis-associated protein 9

  4. XM_006517446.4 → XP_006517509.1  spermatogenesis-associated protein 9 isoform X4

    Conserved Domains (1) summary
    pfam15824
    Location:1 → 190
    SPATA9; Spermatogenesis-associated protein 9

  5. XM_036158203.1 → XP_036014096.1  spermatogenesis-associated protein 9 isoform X3

    Conserved Domains (1) summary
    pfam15824
    Location:1 → 220
    SPATA9; Spermatogenesis-associated protein 9

  6. XM_036158204.1 → XP_036014097.1  spermatogenesis-associated protein 9 isoform X6

    Conserved Domains (1) summary
    pfam15824
    Location:1 → 131
    SPATA9; Spermatogenesis-associated protein 9

  7. XM_006517443.5 → XP_006517506.1  spermatogenesis-associated protein 9 isoform X1

    See identical proteins and their annotated locations for XP_006517506.1

    UniProtKB/Swiss-Prot
    Q9D4M8, Q9D9R3
    Conserved Domains (1) summary
    pfam15824
    Location:1 → 252
    SPATA9; Spermatogenesis-associated protein 9
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D9R3.1 GenPept UniProtKB/Swiss-Prot:Q9D9R3

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