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9130401M01Rik RIKEN cDNA 9130401M01 gene [ Mus musculus (house mouse) ]

Gene ID: 75758, updated on 2-Nov-2024

Summary

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Official Symbol
9130401M01Rikprovided by MGI
Official Full Name
RIKEN cDNA 9130401M01 geneprovided by MGI
Primary source
MGI:MGI:1923008
See related
Ensembl:ENSMUSG00000101892 AllianceGenome:MGI:1923008
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in cerebral cortex ventricular layer; pituitary gland; and submandibular gland primordium. Orthologous to several human genes including C8orf76 (chromosome 8 open reading frame 76). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in ovary adult (RPKM 18.7), adrenal adult (RPKM 17.9) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See 9130401M01Rik in Genome Data Viewer
Location:
15 D1; 15 24.23 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (57885666..57897690, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (58022270..58034294, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5478 Neighboring gene nuclear encoded tRNA methionine 16 (anticodon CAT) Neighboring gene predicted gene, 57624 Neighboring gene family with sequence similarity 83, member A Neighboring gene STARR-positive B cell enhancer ABC_E5479 Neighboring gene STARR-positive B cell enhancer ABC_E8589 Neighboring gene predicted gene, 53893 Neighboring gene predicted gene, 22299

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Partial transcriptome of the developing pituitary gland. Douglas KR, et al. Genomics, 2000 Dec 15. PMID 11161784
  2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  3. Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Bedogni F, et al. Front Mol Neurosci, 2021. PMID 34321999, Free PMC Article
  4. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  5. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Potential readthrough

Included gene: Zhx1

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C8orf76 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029418.4 → NP_083694.1  uncharacterized protein C8orf76 homolog

    See identical proteins and their annotated locations for NP_083694.1

    Status: PROVISIONAL

    Source sequence(s)
    BC050895
    Consensus CDS
    CCDS37078.1
    UniProtKB/Swiss-Prot
    Q9D2X8
    Related
    ENSMUSP00000098220.4, ENSMUST00000100655.5
    Conserved Domains (2) summary
    sd00006
    Location:130 → 159
    TPR; TPR repeat [structural motif]
    pfam13432
    Location:60 → 114
    TPR_16; Tetratricopeptide repeat

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    57885666..57897690 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D2X8.1 GenPept UniProtKB/Swiss-Prot:Q9D2X8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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