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Cfap299 cilia and flagella associated protein 299 [ Mus musculus (house mouse) ]

Gene ID: 75784, updated on 2-Nov-2024

Summary

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Official Symbol
Cfap299provided by MGI
Official Full Name
cilia and flagella associated protein 299provided by MGI
Primary source
MGI:MGI:1916571
See related
Ensembl:ENSMUSG00000057816 AllianceGenome:MGI:1916571
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1700007G11Rik; 4930428O21Rik
Summary
Located in cytoplasm. Is expressed in central nervous system; node; and reproductive system. Orthologous to human CFAP299 (cilia and flagella associated protein 299). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 12.5) See more
Orthologs
human all
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Genomic context

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See Cfap299 in Genome Data Viewer
Location:
5 E3; 5 47.77 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (98476998..98949912)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (98329138..98802053)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A730035I17 gene Neighboring gene PR domain containing 8 Neighboring gene fibroblast growth factor 5 Neighboring gene STARR-seq mESC enhancer starr_13701 Neighboring gene predicted gene, 34475 Neighboring gene microRNA 703 Neighboring gene STARR-seq mESC enhancer starr_13702 Neighboring gene RIKEN cDNA 1700010H22 gene Neighboring gene STARR-seq mESC enhancer starr_13703 Neighboring gene predicted gene, 24279 Neighboring gene predicted gene, 42122 Neighboring gene Bmp3 5' regulatory region Neighboring gene predicted gene, 34563 Neighboring gene predicted gene, 42123 Neighboring gene bone morphogenetic protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Cloning of a new testis-enriched gene C4orf22 and its role in cell cycle and apoptosis in mouse spermatogenic cells. Li H, et al. Mol Biol Rep, 2019 Apr. PMID 30820741
  2. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
  3. Integrated microarray and ChIP analysis identifies multiple Foxa2 dependent target genes in the notochord. Tamplin OJ, et al. Dev Biol, 2011 Dec 15. PMID 22008794
  4. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
  5. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Chemically induced (ENU) (1) 
  • Targeted (2) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
cilia- and flagella-associated protein 299
Names
uncharacterized protein C4orf22 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024614.2 → NP_001019785.1  cilia- and flagella-associated protein 299 isoform 1

    See identical proteins and their annotated locations for NP_001019785.1

    Status: VALIDATED

    Source sequence(s)
    AC132255, AC140359, AC147376, AC151721
    Consensus CDS
    CCDS19456.1
    UniProtKB/Swiss-Prot
    Q810M1
    Related
    ENSMUSP00000079208.4, ENSMUST00000080333.8
    Conserved Domains (1) summary
    pfam14713
    Location:13 → 232
    DUF4464; Domain of unknown function (DUF4464)

  2. NM_001417875.1 → NP_001404804.1  cilia- and flagella-associated protein 299 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC132255, AC140359, AC147376, AC151721

  3. NM_001417876.1 → NP_001404805.1  cilia- and flagella-associated protein 299 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC147376

  4. NM_001417877.1 → NP_001404806.1  cilia- and flagella-associated protein 299 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC147376

  5. NM_001417878.1 → NP_001404807.1  cilia- and flagella-associated protein 299 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC132255, AC140359, AC151721

  6. NM_001417879.1 → NP_001404808.1  cilia- and flagella-associated protein 299 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC147376

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    98476998..98949912
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006535280.5 → XP_006535343.1  cilia- and flagella-associated protein 299 isoform X2

    Conserved Domains (1) summary
    pfam14713
    Location:13 → 206
    DUF4464; Domain of unknown function (DUF4464)

  2. XM_006535279.5 → XP_006535342.1  cilia- and flagella-associated protein 299 isoform X1

    Conserved Domains (1) summary
    pfam14713
    Location:13 → 280
    DUF4464; Domain of unknown function (DUF4464)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q810M1.1 GenPept UniProtKB/Swiss-Prot:Q810M1

Gene LinkOut

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