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Fam227b family with sequence similarity 227, member B [ Mus musculus (house mouse) ]

Gene ID: 75823, updated on 2-Nov-2024

Summary

Official Symbol
Fam227bprovided by MGI
Official Full Name
family with sequence similarity 227, member Bprovided by MGI
Primary source
MGI:MGI:1923073
See related
Ensembl:ENSMUSG00000027209 AllianceGenome:MGI:1923073
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4930525F21Rik
Summary
Orthologous to human FAM227B (family with sequence similarity 227 member B). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 11.1), large intestine adult (RPKM 2.9) and 11 other tissues See more
Orthologs
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Genomic context

See Fam227b in Genome Data Viewer
Location:
2 F1; 2 61.76 cM
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (125825403..125994048, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (125983473..126152153, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene SECIS binding protein 2-like Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:125602741-125602942 Neighboring gene STARR-positive B cell enhancer ABC_E5976 Neighboring gene STARR-positive B cell enhancer ABC_E7857 Neighboring gene STARR-positive B cell enhancer ABC_E11156 Neighboring gene COP9 signalosome subunit 2 Neighboring gene galactokinase 2 Neighboring gene fibroblast growth factor 7 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:125977713-125977822 Neighboring gene predicted gene, 26496 Neighboring gene DTW domain containing 1 Neighboring gene STARR-seq mESC enhancer starr_05598 Neighboring gene predicted gene, 54149 Neighboring gene STARR-seq mESC enhancer starr_05599 Neighboring gene STARR-seq mESC enhancer starr_05600 Neighboring gene STARR-positive B cell enhancer ABC_E2643 Neighboring gene STARR-seq mESC enhancer starr_05601 Neighboring gene STARR-seq mESC enhancer starr_05602 Neighboring gene STARR-seq mESC enhancer starr_05603 Neighboring gene STARR-positive B cell enhancer mm9_chr2:126188755-126189056 Neighboring gene ATPase, class I, type 8B, member 4 Neighboring gene Brca1 associated protein 1 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029455.3NP_083731.2  protein FAM227B

    See identical proteins and their annotated locations for NP_083731.2

    Status: VALIDATED

    Source sequence(s)
    AL845292, AL929175
    Consensus CDS
    CCDS50697.1
    UniProtKB/Swiss-Prot
    A2AR82, Q9D518
    Related
    ENSMUSP00000106076.3, ENSMUST00000110446.9
    Conserved Domains (1) summary
    pfam14922
    Location:143293
    FWWh; Protein of unknown function

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    125825403..125994048 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006500348.5XP_006500411.1  protein FAM227B isoform X1

    Conserved Domains (1) summary
    pfam14922
    Location:213358
    FWWh; Protein of unknown function
  2. XM_006500349.3XP_006500412.1  protein FAM227B isoform X2

    Conserved Domains (1) summary
    pfam14922
    Location:51196
    FWWh; Protein of unknown function
  3. XM_006500350.3XP_006500413.1  protein FAM227B isoform X3

    Conserved Domains (1) summary
    pfam14922
    Location:19164
    FWWh; Protein of unknown function