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Speer4cos spermatogenesis associated glutamate (E)-rich protein 4C, opposite strand transcript [ Mus musculus (house mouse) ]

Gene ID: 75858, updated on 17-Aug-2024

Summary

Official Symbol
Speer4cosprovided by MGI
Official Full Name
spermatogenesis associated glutamate (E)-rich protein 4C, opposite strand transcriptprovided by MGI
Primary source
MGI:MGI:1923108
See related
Ensembl:ENSMUSG00000089871 AllianceGenome:MGI:1923108
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SPEER-7; Speer7-ps; Speer7-ps1; 4930568L21Rik
Expression
Biased expression in testis adult (RPKM 4.5), ovary adult (RPKM 1.2) and 4 other tissues See more
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Genomic context

See Speer4cos in Genome Data Viewer
Location:
5 A2; 5 6.51 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (15885708..15919594)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (15680710..15714596)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30417 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4D Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4C2 Neighboring gene STARR-seq mESC enhancer starr_12481 Neighboring gene STARR-positive B cell enhancer mm9_chr5:15203829-15204130 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4C1 Neighboring gene STARR-seq mESC enhancer starr_12483 Neighboring gene RIKEN cDNA 4930519H02 gene Neighboring gene STARR-seq mESC enhancer starr_12484 Neighboring gene predicted gene, 52852

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Other Names

  • sperm-associated glutamate (E)-rich protein 7, pseudogene
  • spermatogenesis associated glutamate (E)-rich protein 7, pseudogene 1
  • spermatogenic-associated glutamate (E)-rich protein 7, pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_001585.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC117685
    Related
    ENSMUST00000162113.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    15885708..15919594
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)