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4930568D16Rik RIKEN cDNA 4930568D16 gene [ Mus musculus (house mouse) ]

Gene ID: 75859, updated on 2-Nov-2024

Summary

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Official Symbol
4930568D16Rikprovided by MGI
Official Full Name
RIKEN cDNA 4930568D16 geneprovided by MGI
Primary source
MGI:MGI:1923109
See related
Ensembl:ENSMUSG00000026882 AllianceGenome:MGI:1923109
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ggta1l1
Summary
Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to be located in Golgi cisterna membrane. Predicted to be active in Golgi apparatus and vesicle. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 2.5) See more
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Genomic context

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See 4930568D16Rik in Genome Data Viewer
Location:
2 B; 2 23.57 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (35244218..35257746, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (35354218..35367729, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene stomatin Neighboring gene STARR-positive B cell enhancer mm9_chr2:35192389-35192690 Neighboring gene glyoxalase 1, pseudogene Neighboring gene RIKEN cDNA 4930402F06 gene Neighboring gene predicted gene, 39797 Neighboring gene glycoprotein galactosyltransferase alpha 1, 3 Neighboring gene STARR-positive B cell enhancer ABC_E9510 Neighboring gene STARR-positive B cell enhancer mm9_chr2:35316734-35317035 Neighboring gene STARR-positive B cell enhancer ABC_E2034

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. CRISPR/Cas9-mediated genome-edited mice reveal 10 testis-enriched genes are dispensable for male fecundity. Park S, et al. Biol Reprod, 2020 Aug 4. PMID 32561905, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables N-acetyllactosaminide 3-alpha-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables glycosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in lipid glycosylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in vesicle IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1
NP_083739.1
XP_006498459.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029463.2 → NP_083739.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1 precursor

    See identical proteins and their annotated locations for NP_083739.1

    Status: VALIDATED

    Source sequence(s)
    AL773523, AL929199
    Consensus CDS
    CCDS50575.1
    UniProtKB/Swiss-Prot
    A2AUQ7, Q9D4R9
    Related
    ENSMUSP00000028243.2, ENSMUST00000028243.2
    Conserved Domains (1) summary
    cl11394
    Location:57 → 319
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    35244218..35257746 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006498396.3 → XP_006498459.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1 isoform X1

    See identical proteins and their annotated locations for XP_006498459.1

    UniProtKB/Swiss-Prot
    A2AUQ7, Q9D4R9
    Conserved Domains (1) summary
    cl11394
    Location:57 → 319
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A2AUQ7.1 GenPept UniProtKB/Swiss-Prot:A2AUQ7

Gene LinkOut

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