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0610040J01Rik RIKEN cDNA 0610040J01 gene [ Mus musculus (house mouse) ]

Gene ID: 76261, updated on 2-Nov-2024

Summary

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Official Symbol
0610040J01Rikprovided by MGI
Official Full Name
RIKEN cDNA 0610040J01 geneprovided by MGI
Primary source
MGI:MGI:1923511
See related
Ensembl:ENSMUSG00000060512 AllianceGenome:MGI:1923511
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in brain; gut; respiratory system; submandibular gland primordium; and urinary system. Orthologous to human C4orf19 (chromosome 4 open reading frame 19). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in colon adult (RPKM 18.6), stomach adult (RPKM 15.9) and 17 other tissues See more
Orthologs
human all
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Genomic context

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See 0610040J01Rik in Genome Data Viewer
Location:
5 C3.1; 5 32.8 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (63969833..64056968)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (63811657..63899626)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_13178 Neighboring gene NACHT and WD repeat domain containing 2, opposite strand Neighboring gene NACHT and WD repeat domain containing 2 Neighboring gene hematological and neurological expressed 1 protein pseudogene Neighboring gene STARR-seq mESC enhancer starr_13179 Neighboring gene STARR-positive B cell enhancer ABC_E8053 Neighboring gene RELT-like 1 Neighboring gene STARR-seq mESC enhancer starr_13182 Neighboring gene STARR-seq mESC enhancer starr_13187 Neighboring gene STARR-positive B cell enhancer ABC_E8054 Neighboring gene STARR-seq mESC enhancer starr_13191 Neighboring gene STARR-seq mESC enhancer starr_13192 Neighboring gene STARR-seq mESC enhancer starr_13193 Neighboring gene predicted gene, 25608 Neighboring gene RIKEN cDNA 5830416I19 gene Neighboring gene STARR-positive B cell enhancer mm9_chr5:64431930-64432231

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The protomap is propagated to cortical plate neurons through an Eomes-dependent intermediate map. Elsen GE, et al. Proc Natl Acad Sci U S A, 2013 Mar 5. PMID 23431145, Free PMC Article
  2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  3. Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Bedogni F, et al. Front Mol Neurosci, 2021. PMID 34321999, Free PMC Article
  4. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
  5. Genetic determinants of micronucleus formation in vivo. Adams DJ, et al. Nature, 2024 Mar. PMID 38355793, Free PMC Article

See all (15) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein C4orf19 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417897.1 → NP_001404826.1  uncharacterized protein C4orf19 homolog

    Status: VALIDATED

    Source sequence(s)
    AC114408, AC158789
    UniProtKB/Swiss-Prot
    Q8BQG8, Q99K99, Q9DCE0

  2. NM_001417898.1 → NP_001404827.1  uncharacterized protein C4orf19 homolog

    Status: VALIDATED

    Source sequence(s)
    AC114408, AC158789
    UniProtKB/Swiss-Prot
    Q8BQG8, Q99K99, Q9DCE0

  3. NM_001417899.1 → NP_001404828.1  uncharacterized protein C4orf19 homolog

    Status: VALIDATED

    Source sequence(s)
    AC114408, AC158789
    UniProtKB/Swiss-Prot
    Q8BQG8, Q99K99, Q9DCE0

  4. NM_001417900.1 → NP_001404829.1  uncharacterized protein C4orf19 homolog

    Status: VALIDATED

    Source sequence(s)
    AC158789
    UniProtKB/Swiss-Prot
    Q8BQG8, Q99K99, Q9DCE0

  5. NM_029554.5 → NP_083830.3  uncharacterized protein C4orf19 homolog

    See identical proteins and their annotated locations for NP_083830.3

    Status: VALIDATED

    Source sequence(s)
    AC114408, AC158789
    Consensus CDS
    CCDS39092.1
    UniProtKB/Swiss-Prot
    Q8BQG8, Q99K99, Q9DCE0
    Related
    ENSMUSP00000080443.4, ENSMUST00000081747.8
    Conserved Domains (1) summary
    pfam15770
    Location:9 → 313
    DUF4699; Domain of unknown function (DUF4699)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    63969833..64056968
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q99K99.2 GenPept UniProtKB/Swiss-Prot:Q99K99

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