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2310001H17Rik RIKEN cDNA 2310001H17 gene [ Mus musculus (house mouse) ]

Gene ID: 76432, updated on 22-Oct-2024

Summary

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Official Symbol
2310001H17Rikprovided by MGI
Official Full Name
RIKEN cDNA 2310001H17 geneprovided by MGI
Primary source
MGI:MGI:1923682
See related
Ensembl:ENSMUSG00000097354 AllianceGenome:MGI:1923682
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in liver adult (RPKM 6.6), large intestine adult (RPKM 5.9) and 17 other tissues See more
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Genomic context

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See 2310001H17Rik in Genome Data Viewer
Location:
6 F3; 6 63.17 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (129209586..129215445, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (129232623..129238482, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53342 Neighboring gene STARR-seq mESC enhancer starr_17477 Neighboring gene C-type lectin domain family 2, member d Neighboring gene STARR-positive B cell enhancer ABC_E4870 Neighboring gene predicted gene, 38906 Neighboring gene STARR-positive B cell enhancer ABC_E6494 Neighboring gene STARR-positive B cell enhancer ABC_E9102 Neighboring gene STARR-positive B cell enhancer ABC_E690 Neighboring gene STARR-positive B cell enhancer ABC_E6495 Neighboring gene STARR-positive B cell enhancer ABC_E4871 Neighboring gene STARR-positive B cell enhancer ABC_E8140 Neighboring gene STARR-positive B cell enhancer ABC_E9019 Neighboring gene STARR-positive B cell enhancer ABC_E6496 Neighboring gene STARR-positive B cell enhancer ABC_E6497 Neighboring gene STARR-positive B cell enhancer ABC_E1329 Neighboring gene STARR-positive B cell enhancer ABC_E11735 Neighboring gene STARR-positive B cell enhancer ABC_E1330 Neighboring gene CD69 antigen Neighboring gene STARR-positive B cell enhancer ABC_E3684 Neighboring gene C-type lectin domain family 2, member m

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
  2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
  3. USP7 represses lineage differentiation genes in mouse embryonic stem cells by both catalytic and noncatalytic activities. Liu C, et al. Sci Adv, 2023 May 19. PMID 37196079, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_040265.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AC142191, AV065335, BE137168
    Related
    ENSMUST00000246617.2

  2. NR_040266.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site and contains an alternate exon in the 5' region, compared to variant 1.
    Source sequence(s)
    AC142191
    Related
    ENSMUST00000180379.5

  3. NR_040268.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate splice site and contains an alternate exon in the 5' region, compared to variant 1.
    Source sequence(s)
    AC142191, BE137168, BE448844
    Related
    ENSMUST00000241809.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    129209586..129215445 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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