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9530020I12Rik RIKEN cDNA 9530020I12 gene [ Mus musculus (house mouse) ]

Gene ID: 77442, updated on 22-Oct-2024

Summary

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Official Symbol
9530020I12Rikprovided by MGI
Official Full Name
RIKEN cDNA 9530020I12 geneprovided by MGI
Primary source
MGI:MGI:1924692
See related
Ensembl:ENSMUSG00000112041 AllianceGenome:MGI:1924692
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
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Genomic context

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See 9530020I12Rik in Genome Data Viewer
Location:
12; 12 A1.1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (11235994..11254503, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (11185993..11204502, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 7420701I03 gene Neighboring gene STARR-seq mESC enhancer starr_31535 Neighboring gene STARR-seq mESC enhancer starr_31536 Neighboring gene potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3 Neighboring gene STARR-seq mESC enhancer starr_31537 Neighboring gene STARR-seq mESC enhancer starr_31538 Neighboring gene STARR-positive B cell enhancer ABC_E7120 Neighboring gene mesogenin 1 Neighboring gene STARR-positive B cell enhancer ABC_E8479 Neighboring gene GEN1, Holliday junction 5' flap endonuclease Neighboring gene structural maintenance of chromosomes 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131083.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    AA543328, AC104880, AK020565
    Related
    ENSMUST00000218368.3

  2. NR_131084.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks one exon and contains three alternate exons, compared to variant 1.
    Source sequence(s)
    AC104880, AI561859

  3. NR_131085.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an exon and contains an alternate exon at the 3' end, compared to variant 1.
    Source sequence(s)
    AC104880, AI561859
    Related
    ENSMUST00000218277.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    11235994..11254503 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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