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SNORD3D small nucleolar RNA, C/D box 3D [ Homo sapiens (human) ]

Gene ID: 780854, updated on 2-Nov-2024

Summary

Official Symbol
SNORD3Dprovided by HGNC
Official Full Name
small nucleolar RNA, C/D box 3Dprovided by HGNC
Primary source
HGNC:HGNC:33192
See related
Ensembl:ENSG00000281000 AllianceGenome:HGNC:33192
Gene type
snoRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
U3-4; RNU3-4
Summary
Predicted to be involved in RNA processing. Predicted to be located in nucleolus. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See SNORD3D in Genome Data Viewer
Location:
17p11.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (19112420..19112636, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (19087444..19087660)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (19015733..19015949, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene kynureninase pseudogene 2 Neighboring gene uncharacterized protein ENSP00000382042-like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8283 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11849 Neighboring gene uncharacterized LOC124903946 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19026149-19026648 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19030843-19031574 Neighboring gene GRB2 related adaptor protein like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19044151-19044752 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19044753-19045353 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19046411-19046923 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19047949-19048460 Neighboring gene GRAPL antisense RNA 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19061738-19062263

Genomic regions, transcripts, and products

General gene information

Other Names

  • U3 small nucleolar RNA D
  • U3 snoRNA D

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_006882.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007952
    Related
    ENST00000630092.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    19112420..19112636 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    19087444..19087660
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)