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B230219D22Rik RIKEN cDNA B230219D22 gene [ Mus musculus (house mouse) ]

Gene ID: 78521, updated on 2-Nov-2024

Summary

Official Symbol
B230219D22Rikprovided by MGI
Official Full Name
RIKEN cDNA B230219D22 geneprovided by MGI
Primary source
MGI:MGI:1925771
See related
Ensembl:ENSMUSG00000045767 AllianceGenome:MGI:1925771
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D530037I19Rik
Summary
Orthologous to human C5orf24 (chromosome 5 open reading frame 24). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in CNS E18 (RPKM 24.8), limb E14.5 (RPKM 22.5) and 28 other tissues See more
Orthologs
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Genomic context

See B230219D22Rik in Genome Data Viewer
Location:
13 B1; 13 30.06 cM
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (55840937..55851313)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (55693124..55703500)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene calcium modulating ligand Neighboring gene DEAD box helicase 46 Neighboring gene STARR-seq mESC enhancer starr_34621 Neighboring gene thioredoxin domain containing 15 Neighboring gene pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2 Neighboring gene RIKEN cDNA 4930451E10 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
UPF0461 protein C5orf24 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_181278.2NP_851795.1  UPF0461 protein C5orf24 homolog

    See identical proteins and their annotated locations for NP_851795.1

    Status: PREDICTED

    Source sequence(s)
    BC051430
    Consensus CDS
    CCDS26552.1
    UniProtKB/Swiss-Prot
    Q80X32, Q8C2G2
    Related
    ENSMUSP00000055271.9, ENSMUST00000057844.10
    Conserved Domains (1) summary
    pfam17724
    Location:1188
    DUF5568; Family of unknown function (DUF5568)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    55840937..55851313
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)