U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

C030004G16Rik RIKEN cDNA C030004G16 gene [ Mus musculus (house mouse) ]

Gene ID: 78536, updated on 17-Aug-2024

Summary

Go to the top of the page Help
Official Symbol
C030004G16Rikprovided by MGI
Official Full Name
RIKEN cDNA C030004G16 geneprovided by MGI
Primary source
MGI:MGI:1925786
See related
AllianceGenome:MGI:1925786
Gene type
ncRNA
RefSeq status
MODEL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Low expression observed in reference dataset See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See C030004G16Rik in Genome Data Viewer
Location:
18; 18 B3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (42748683..42756907, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (42615618..42623817, complement)

Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:42670844-42671027 Neighboring gene STARR-seq mESC enhancer starr_44443 Neighboring gene transcription elongation regulator 1 (CA150) Neighboring gene STARR-positive B cell enhancer mm9_chr18:42717560-42717861 Neighboring gene STARR-positive B cell enhancer ABC_E400 Neighboring gene G protein-coupled receptor 151 Neighboring gene STARR-seq mESC enhancer starr_44444 Neighboring gene protein phosphatase 2, regulatory subunit B, beta Neighboring gene predicted gene, 41713 Neighboring gene STARR-seq mESC enhancer starr_44445 Neighboring gene STARR-seq mESC enhancer starr_44446 Neighboring gene predicted gene, 52345

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000084.7 Reference GRCm39 C57BL/6J

    Range
    42748683..42756907 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004939925.1 RNA Sequence

  2. XR_004939920.1 RNA Sequence

  3. XR_004939919.1 RNA Sequence

  4. XR_004939924.1 RNA Sequence

  5. XR_004939927.1 RNA Sequence

  6. XR_004939929.1 RNA Sequence

  7. XR_004939922.1 RNA Sequence

  8. XR_004939930.1 RNA Sequence

  9. XR_004939928.1 RNA Sequence

  10. XR_001782540.2 RNA Sequence

  11. XR_004939926.1 RNA Sequence

  12. XR_003952619.1 RNA Sequence

  13. XR_004939923.1 RNA Sequence

  14. XR_004939921.1 RNA Sequence

  15. XR_004939918.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.